Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 MIR4492-201ENST00000581627 80 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 MPDU1-223ENST00000582151 728 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AL365203.3-201ENST00000609742 2057 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 AC024909.3-201ENST00000611513 2257 ntBASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.36■□□□□ 0.37
ATG4AQ8WYN0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 ELK2BP-201ENST00000415014 1224 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 HCG4P8-203ENST00000443049 980 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AC139887.3-201ENST00000568585 713 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 MIR3652-201ENST00000579335 131 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AC008608.2-201ENST00000606089 416 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AC004706.3-202ENST00000621574 984 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 REXO1L3P-201ENST00000622202 1288 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 LINC00554-201ENST00000564841 3011 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 AL596087.1-201ENST00000400979 1969 ntBASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATG4AQ8WYN0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SLC25A6P2-201ENST00000497974 877 ntBASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 AC006504.4-201ENST00000592118 1568 ntBASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 PI4KAP1-204ENST00000612579 1703 ntBASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATG4AQ8WYN0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATG4AQ8WYN0 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATG4AQ8WYN0 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.33■□□□□ 0.37
ATG4AQ8WYN0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.33■□□□□ 0.37
ATG4AQ8WYN0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms