Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TPM4P67936 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.83■□□□□ 0.61
TPM4P67936 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
TPM4P67936 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
TPM4P67936 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.83■□□□□ 0.61
TPM4P67936 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
TPM4P67936 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
TPM4P67936 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.83■□□□□ 0.61
TPM4P67936 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
TPM4P67936 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 AK4P3-201ENST00000418260 669 ntBASIC18.83■□□□□ 0.6
TPM4P67936 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.83■□□□□ 0.6
TPM4P67936 SIGLEC30P-201ENST00000455569 941 ntBASIC18.83■□□□□ 0.6
TPM4P67936 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.83■□□□□ 0.6
TPM4P67936 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.83■□□□□ 0.6
TPM4P67936 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.83■□□□□ 0.6
TPM4P67936 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
TPM4P67936 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TPM4P67936 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.83■□□□□ 0.6
TPM4P67936 PAUPAR-201ENST00000630360 2965 ntBASIC18.83■□□□□ 0.6
TPM4P67936 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TPM4P67936 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TPM4P67936 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.82■□□□□ 0.6
TPM4P67936 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.82■□□□□ 0.6
TPM4P67936 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.82■□□□□ 0.6
TPM4P67936 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 AC011467.2-201ENST00000598425 242 ntBASIC18.82■□□□□ 0.6
TPM4P67936 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.82■□□□□ 0.6
TPM4P67936 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TPM4P67936 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.82■□□□□ 0.6
TPM4P67936 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TPM4P67936 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM4P67936 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM4P67936 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM4P67936 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM4P67936 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.81■□□□□ 0.6
TPM4P67936 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TPM4P67936 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TPM4P67936 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.81■□□□□ 0.6
TPM4P67936 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
TPM4P67936 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM4P67936 BANP-201ENST00000286122 2368 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM4P67936 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.81■□□□□ 0.6
TPM4P67936 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.81■□□□□ 0.6
TPM4P67936 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TPM4P67936 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC18.81■□□□□ 0.6
TPM4P67936 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TPM4P67936 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms