Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HOXA1P49639 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXA1P49639 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXA1P49639 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
HOXA1P49639 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
HOXA1P49639 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 STARP1-201ENST00000397973 869 ntBASIC13.97□□□□□ -0.17
HOXA1P49639 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXA1P49639 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.97□□□□□ -0.17
HOXA1P49639 AC005252.3-201ENST00000623855 2258 ntBASIC13.97□□□□□ -0.17
HOXA1P49639 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXA1P49639 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HOXA1P49639 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXA1P49639 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXA1P49639 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
HOXA1P49639 AC096633.1-201ENST00000422446 749 ntBASIC13.96□□□□□ -0.17
HOXA1P49639 SAPCD2P2-201ENST00000431719 1174 ntBASIC13.96□□□□□ -0.17
HOXA1P49639 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXA1P49639 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.96□□□□□ -0.17
HOXA1P49639 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXA1P49639 DET1-205ENST00000558413 583 ntTSL 4 BASIC13.96□□□□□ -0.17
HOXA1P49639 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms