Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.6■□□□□ 0.57
CENPFP49454 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.6■□□□□ 0.57
CENPFP49454 KRT18P55-202ENST00000578578 1546 ntBASIC18.6■□□□□ 0.57
CENPFP49454 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.6■□□□□ 0.57
CENPFP49454 BICD1-207ENST00000551848 1962 ntBASIC18.6■□□□□ 0.57
CENPFP49454 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.6■□□□□ 0.57
CENPFP49454 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CENPFP49454 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.6■□□□□ 0.57
CENPFP49454 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.6■□□□□ 0.57
CENPFP49454 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.6■□□□□ 0.57
CENPFP49454 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.6■□□□□ 0.57
CENPFP49454 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC18.6■□□□□ 0.57
CENPFP49454 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CENPFP49454 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 GPAA1P2-201ENST00000417923 928 ntBASIC18.59■□□□□ 0.57
CENPFP49454 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC18.59■□□□□ 0.57
CENPFP49454 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 AC005229.1-201ENST00000392885 409 ntBASIC18.59■□□□□ 0.57
CENPFP49454 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.59■□□□□ 0.57
CENPFP49454 AC007969.1-201ENST00000433675 447 ntBASIC18.59■□□□□ 0.57
CENPFP49454 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.59■□□□□ 0.57
CENPFP49454 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.59■□□□□ 0.57
CENPFP49454 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CENPFP49454 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.59■□□□□ 0.57
CENPFP49454 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CENPFP49454 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
CENPFP49454 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.59■□□□□ 0.57
CENPFP49454 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CENPFP49454 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.58■□□□□ 0.57
CENPFP49454 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CENPFP49454 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.58■□□□□ 0.57
CENPFP49454 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.58■□□□□ 0.57
CENPFP49454 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.58■□□□□ 0.57
CENPFP49454 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CENPFP49454 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.58■□□□□ 0.57
CENPFP49454 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.58■□□□□ 0.56
CENPFP49454 AC067852.2-201ENST00000590513 2313 ntBASIC18.58■□□□□ 0.56
CENPFP49454 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.58■□□□□ 0.56
CENPFP49454 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.58■□□□□ 0.56
CENPFP49454 RPL7P3-201ENST00000441388 714 ntBASIC18.58■□□□□ 0.56
CENPFP49454 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CENPFP49454 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.58■□□□□ 0.56
CENPFP49454 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CENPFP49454 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CENPFP49454 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CENPFP49454 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CENPFP49454 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CENPFP49454 RN7SL618P-201ENST00000477850 296 ntBASIC18.57■□□□□ 0.56
CENPFP49454 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CENPFP49454 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.57■□□□□ 0.56
CENPFP49454 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CENPFP49454 FLJ13224-201ENST00000313737 1514 ntBASIC18.57■□□□□ 0.56
CENPFP49454 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.57■□□□□ 0.56
CENPFP49454 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CENPFP49454 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms