Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 SPDYE21P-201ENST00000413323 827 ntBASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 AC092384.3-202ENST00000564646 2873 ntBASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC39Q9UFE4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 EGFEM1P-202ENST00000431685 1563 ntBASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SIGLEC16-201ENST00000599858 1437 ntBASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 AC132008.2-207ENST00000454517 770 ntBASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 AL121772.3-201ENST00000610840 674 ntBASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC39Q9UFE4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 AC092364.2-201ENST00000596710 2692 ntBASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC39Q9UFE4 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms