Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 FAM87A-204ENST00000613235 858 ntBASIC16.3■□□□□ 0.2
NDE1Q9NXR1 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 FAM45BP-202ENST00000592932 1624 ntBASIC16.3■□□□□ 0.2
NDE1Q9NXR1 AL049757.1-201ENST00000616842 1596 ntBASIC16.3■□□□□ 0.2
NDE1Q9NXR1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 AL021920.2-201ENST00000624828 1351 ntBASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.29■□□□□ 0.2
NDE1Q9NXR1 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 AC002310.6-201ENST00000624451 1377 ntBASIC16.28■□□□□ 0.2
NDE1Q9NXR1 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 AL365209.1-201ENST00000624418 6473 ntBASIC16.28■□□□□ 0.2
NDE1Q9NXR1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 ZNF444P1-201ENST00000559497 298 ntBASIC16.28■□□□□ 0.2
NDE1Q9NXR1 NAPSB-206ENST00000562112 1266 ntBASIC16.28■□□□□ 0.2
NDE1Q9NXR1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 AC009336.1-201ENST00000608941 1553 ntBASIC16.28■□□□□ 0.2
NDE1Q9NXR1 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
NDE1Q9NXR1 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms