Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDX1P47902 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
CDX1P47902 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDX1P47902 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDX1P47902 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 MED16-201ENST00000269814 1199 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.77□□□□□ -0.21
CDX1P47902 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 ABCD1P5-201ENST00000445663 754 ntBASIC13.77□□□□□ -0.21
CDX1P47902 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CDX1P47902 AC122714.2-201ENST00000502787 707 ntBASIC13.77□□□□□ -0.21
CDX1P47902 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 AC106795.1-205ENST00000512851 1056 ntBASIC13.77□□□□□ -0.21
CDX1P47902 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.77□□□□□ -0.21
CDX1P47902 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.77□□□□□ -0.21
CDX1P47902 AC092068.3-201ENST00000587894 2016 ntBASIC13.77□□□□□ -0.21
CDX1P47902 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC13.77□□□□□ -0.21
CDX1P47902 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.77□□□□□ -0.21
CDX1P47902 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CDX1P47902 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDX1P47902 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 AP005117.1-201ENST00000584346 1413 ntBASIC13.76□□□□□ -0.21
CDX1P47902 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 KRT8P47-201ENST00000604727 1398 ntBASIC13.76□□□□□ -0.21
CDX1P47902 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CDX1P47902 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 AC103564.2-201ENST00000432853 1299 ntBASIC13.76□□□□□ -0.21
CDX1P47902 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 AP002469.2-201ENST00000531724 424 ntBASIC13.76□□□□□ -0.21
CDX1P47902 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 AC008608.2-201ENST00000606089 416 ntBASIC13.76□□□□□ -0.21
CDX1P47902 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 AL355877.3-201ENST00000622820 899 ntBASIC13.76□□□□□ -0.21
CDX1P47902 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms