Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
NPAS3Q8IXF0 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 HLA-H-201ENST00000383620 1096 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 HLA-V-204ENST00000476601 1289 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AC027307.3-201ENST00000594262 1100 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AC025048.6-201ENST00000634326 1161 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AL358472.5-202ENST00000641448 1267 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 AC108860.2-201ENST00000562760 2183 ntBASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NPAS3Q8IXF0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NPAS3Q8IXF0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NPAS3Q8IXF0 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms