Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AL512652.2-201ENST00000625156 1716 ntBASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AL353705.2-201ENST00000428243 662 ntBASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AC021097.1-201ENST00000607902 574 ntBASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 AL033527.5-202ENST00000641632 1098 ntBASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC11.09□□□□□ -0.63
VPS13DQ5THJ4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 TTTY23B-201ENST00000442790 549 ntBASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 SDHAP3-202ENST00000515467 728 ntBASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 AC099336.1-201ENST00000417053 1171 ntBASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 TPRX2P-201ENST00000535362 881 ntBASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 AL645728.1-201ENST00000366221 2101 ntBASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
VPS13DQ5THJ4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC015936.2-201ENST00000593177 259 ntBASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC11.07□□□□□ -0.64
VPS13DQ5THJ4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms