Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SLC28A1O00337 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
SLC28A1O00337 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
SLC28A1O00337 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.19■□□□□ 0.18
SLC28A1O00337 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SLC28A1O00337 MTHFR-217ENST00000641820 1569 ntBASIC16.19■□□□□ 0.18
SLC28A1O00337 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.19■□□□□ 0.18
SLC28A1O00337 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.19■□□□□ 0.18
SLC28A1O00337 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.19■□□□□ 0.18
SLC28A1O00337 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SLC28A1O00337 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.19■□□□□ 0.18
SLC28A1O00337 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 MPDU1-223ENST00000582151 728 ntBASIC16.19■□□□□ 0.18
SLC28A1O00337 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 AC004706.3-202ENST00000621574 984 ntBASIC16.19■□□□□ 0.18
SLC28A1O00337 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SLC28A1O00337 AC011270.2-201ENST00000624293 2550 ntBASIC16.19■□□□□ 0.18
SLC28A1O00337 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.19■□□□□ 0.18
SLC28A1O00337 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.19■□□□□ 0.18
SLC28A1O00337 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
SLC28A1O00337 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC28A1O00337 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SLC28A1O00337 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC28A1O00337 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.18■□□□□ 0.18
SLC28A1O00337 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.18■□□□□ 0.18
SLC28A1O00337 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC28A1O00337 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.18■□□□□ 0.18
SLC28A1O00337 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.18■□□□□ 0.18
SLC28A1O00337 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.18■□□□□ 0.18
SLC28A1O00337 MTDHP4-201ENST00000600287 670 ntBASIC16.18■□□□□ 0.18
SLC28A1O00337 AC008608.2-201ENST00000606089 416 ntBASIC16.18■□□□□ 0.18
SLC28A1O00337 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SLC28A1O00337 GGT3P-204ENST00000453783 1664 ntBASIC16.18■□□□□ 0.18
SLC28A1O00337 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SLC28A1O00337 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms