Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 ZNF259P1-201ENST00000407656 1365 ntBASIC20.3■□□□□ 0.84
VPS53Q5VIR6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.3■□□□□ 0.84
VPS53Q5VIR6 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 AL645728.1-201ENST00000366221 2101 ntBASIC20.29■□□□□ 0.84
VPS53Q5VIR6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 CRYGEP-201ENST00000412192 528 ntBASIC20.29■□□□□ 0.84
VPS53Q5VIR6 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 AC018845.2-201ENST00000568326 409 ntBASIC20.29■□□□□ 0.84
VPS53Q5VIR6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.29■□□□□ 0.84
VPS53Q5VIR6 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 MIR940-201ENST00000401276 94 ntBASIC20.28■□□□□ 0.84
VPS53Q5VIR6 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 POLD2P1-201ENST00000511220 997 ntBASIC20.28■□□□□ 0.84
VPS53Q5VIR6 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 AC010507.1-201ENST00000633895 436 ntBASIC20.28■□□□□ 0.84
VPS53Q5VIR6 OVCH1-AS1-204ENST00000641955 5529 ntBASIC20.28■□□□□ 0.84
VPS53Q5VIR6 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 SLC22A20-204ENST00000530038 1673 ntBASIC20.28■□□□□ 0.84
VPS53Q5VIR6 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VPS53Q5VIR6 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 FAM185BP-201ENST00000443595 716 ntBASIC20.27■□□□□ 0.84
VPS53Q5VIR6 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS53Q5VIR6 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS53Q5VIR6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS53Q5VIR6 KRT8P49-201ENST00000604166 1432 ntBASIC20.27■□□□□ 0.83
VPS53Q5VIR6 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
VPS53Q5VIR6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VPS53Q5VIR6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 TOP3BP1-201ENST00000420768 1380 ntBASIC20.26■□□□□ 0.83
VPS53Q5VIR6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms