Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
CDH11P55287 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH11P55287 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH11P55287 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH11P55287 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH11P55287 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
CDH11P55287 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.46■□□□□ 0.07
CDH11P55287 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 AC079776.4-201ENST00000511039 504 ntBASIC15.46■□□□□ 0.07
CDH11P55287 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.46■□□□□ 0.07
CDH11P55287 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH11P55287 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH11P55287 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CDH11P55287 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH11P55287 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.46■□□□□ 0.06
CDH11P55287 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH11P55287 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CDH11P55287 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.06
CDH11P55287 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 FRMD8P1-201ENST00000440433 1524 ntBASIC15.45■□□□□ 0.06
CDH11P55287 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 RCN1P2-201ENST00000398357 915 ntBASIC15.45■□□□□ 0.06
CDH11P55287 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.45■□□□□ 0.06
CDH11P55287 AC122714.2-201ENST00000502787 707 ntBASIC15.45■□□□□ 0.06
CDH11P55287 AF238378.1-201ENST00000526806 358 ntBASIC15.45■□□□□ 0.06
CDH11P55287 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.45■□□□□ 0.06
CDH11P55287 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 AC008608.2-201ENST00000606089 416 ntBASIC15.45■□□□□ 0.06
CDH11P55287 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH11P55287 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 AL049757.1-201ENST00000616842 1596 ntBASIC15.45■□□□□ 0.06
CDH11P55287 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CDH11P55287 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.45■□□□□ 0.06
CDH11P55287 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CDH11P55287 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH11P55287 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms