Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC3O15379 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
HDAC3O15379 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC3O15379 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HDAC3O15379 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
HDAC3O15379 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 SPDYE21P-201ENST00000413323 827 ntBASIC16.41■□□□□ 0.22
HDAC3O15379 AC104076.2-201ENST00000448912 469 ntBASIC16.41■□□□□ 0.22
HDAC3O15379 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
HDAC3O15379 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.41■□□□□ 0.22
HDAC3O15379 AC004817.3-201ENST00000602957 2129 ntBASIC16.41■□□□□ 0.22
HDAC3O15379 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.41■□□□□ 0.22
HDAC3O15379 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HDAC3O15379 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.41■□□□□ 0.22
HDAC3O15379 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HDAC3O15379 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HDAC3O15379 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.4■□□□□ 0.22
HDAC3O15379 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HDAC3O15379 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC3O15379 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 AC022616.7-201ENST00000525383 220 ntBASIC16.4■□□□□ 0.22
HDAC3O15379 AL136038.3-201ENST00000561909 1096 ntBASIC16.4■□□□□ 0.22
HDAC3O15379 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.4■□□□□ 0.22
HDAC3O15379 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC3O15379 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HDAC3O15379 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.4■□□□□ 0.22
HDAC3O15379 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HDAC3O15379 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
HDAC3O15379 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
HDAC3O15379 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HDAC3O15379 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.39■□□□□ 0.21
HDAC3O15379 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.39■□□□□ 0.21
HDAC3O15379 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 AL603832.2-201ENST00000566195 2125 ntBASIC16.39■□□□□ 0.21
HDAC3O15379 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
HDAC3O15379 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HDAC3O15379 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HDAC3O15379 LINC00982-205ENST00000420957 435 ntBASIC16.39■□□□□ 0.21
HDAC3O15379 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.39■□□□□ 0.21
HDAC3O15379 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.39■□□□□ 0.21
HDAC3O15379 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.39■□□□□ 0.21
HDAC3O15379 NTF6B-201ENST00000591913 560 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms