Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
NEK3P51956 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEK3P51956 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEK3P51956 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEK3P51956 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
NEK3P51956 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEK3P51956 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEK3P51956 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
NEK3P51956 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 FABP5-202ENST00000396359 986 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 KRT18P3-201ENST00000451602 1288 ntBASIC17.4■□□□□ 0.38
NEK3P51956 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.4■□□□□ 0.38
NEK3P51956 AC008667.4-201ENST00000607370 168 ntBASIC17.4■□□□□ 0.38
NEK3P51956 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
NEK3P51956 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
NEK3P51956 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEK3P51956 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NEK3P51956 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
NEK3P51956 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NEK3P51956 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
NEK3P51956 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.39■□□□□ 0.38
NEK3P51956 AL135999.2-201ENST00000622438 1686 ntBASIC17.39■□□□□ 0.37
NEK3P51956 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.39■□□□□ 0.37
NEK3P51956 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NEK3P51956 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.39■□□□□ 0.37
NEK3P51956 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 IGHV3-65-201ENST00000523210 341 ntBASIC17.39■□□□□ 0.37
NEK3P51956 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NEK3P51956 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.39■□□□□ 0.37
NEK3P51956 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
NEK3P51956 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.39■□□□□ 0.37
NEK3P51956 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEK3P51956 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 AL513477.1-201ENST00000602865 2407 ntBASIC17.38■□□□□ 0.37
NEK3P51956 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.38■□□□□ 0.37
NEK3P51956 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NEK3P51956 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.38■□□□□ 0.37
NEK3P51956 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.38■□□□□ 0.37
NEK3P51956 AC007967.2-201ENST00000432613 625 ntBASIC17.38■□□□□ 0.37
NEK3P51956 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms