Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MPDU1-223ENST00000582151 728 ntBASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 AC131009.4-201ENST00000624048 1740 ntBASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
HDDC3Q8N4P3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 RNU1-129P-201ENST00000384064 167 ntBASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 AC109635.5-201ENST00000533593 962 ntBASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 U1.21-201ENST00000580816 167 ntBASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 AL031055.1-201ENST00000606362 631 ntBASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HDDC3Q8N4P3 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 FZD10-202ENST00000539839 3282 ntBASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 GK-202ENST00000378941 458 ntTSL 3 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 IGHV3-62-201ENST00000520057 340 ntBASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 AL390955.2-201ENST00000603032 514 ntBASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 AC012645.4-201ENST00000610691 1061 ntBASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HDDC3Q8N4P3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDDC3Q8N4P3 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.86■□□□□ 0.29
HDDC3Q8N4P3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HDDC3Q8N4P3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HDDC3Q8N4P3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms