Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 FRMD8P1-201ENST00000440433 1524 ntBASIC13.86□□□□□ -0.19
VPS13CQ709C8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 ZNF767P-206ENST00000513792 565 ntBASIC13.86□□□□□ -0.19
VPS13CQ709C8 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
VPS13CQ709C8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
VPS13CQ709C8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AC098850.1-201ENST00000419919 790 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 MYCLP2-201ENST00000449268 967 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AL512343.1-201ENST00000605837 169 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 PCDHB17P-201ENST00000539533 2393 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 AC010319.3-201ENST00000597028 470 ntBASIC13.85□□□□□ -0.19
VPS13CQ709C8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.85□□□□□ -0.19
VPS13CQ709C8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VPS13CQ709C8 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 RNU1-129P-201ENST00000384064 167 ntBASIC13.84□□□□□ -0.19
VPS13CQ709C8 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 U1.21-201ENST00000580816 167 ntBASIC13.84□□□□□ -0.19
VPS13CQ709C8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AC093525.9-201ENST00000624961 1746 ntBASIC13.84□□□□□ -0.19
VPS13CQ709C8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 FAM220BP-201ENST00000377689 816 ntBASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms