Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 SLC25A3P1-201ENST00000443844 931 ntBASIC15.15■□□□□ 0.02
CCDC58Q4VC31 AL359075.1-203ENST00000462729 1002 ntBASIC15.15■□□□□ 0.02
CCDC58Q4VC31 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC58Q4VC31 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 FLJ16779-201ENST00000612722 7638 ntBASIC15.14■□□□□ 0.01
CCDC58Q4VC31 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 AL009178.2-201ENST00000597278 2719 ntBASIC15.14■□□□□ 0.01
CCDC58Q4VC31 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ATP5G1P1-201ENST00000448724 379 ntBASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 AC125634.1-201ENST00000438758 1403 ntBASIC15.14■□□□□ 0.01
CCDC58Q4VC31 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC58Q4VC31 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms