Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 AC003669.1-201ENST00000334569 611 ntBASIC14.91□□□□□ -0.02
SOX2P48431 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX2P48431 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 AP002490.2-201ENST00000524791 560 ntBASIC14.91□□□□□ -0.02
SOX2P48431 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.91□□□□□ -0.02
SOX2P48431 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SOX2P48431 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SOX2P48431 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX2P48431 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.91□□□□□ -0.02
SOX2P48431 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
SOX2P48431 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SOX2P48431 TUBB8P12-201ENST00000308911 1335 ntBASIC14.91□□□□□ -0.02
SOX2P48431 TUBB7P-202ENST00000428444 1305 ntBASIC14.91□□□□□ -0.02
SOX2P48431 TUBB8P7-204ENST00000567960 1332 ntBASIC14.91□□□□□ -0.02
SOX2P48431 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 LINC00554-201ENST00000564841 3011 ntBASIC14.9□□□□□ -0.02
SOX2P48431 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.9□□□□□ -0.02
SOX2P48431 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.9□□□□□ -0.02
SOX2P48431 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 AC012306.2-201ENST00000609350 630 ntBASIC14.9□□□□□ -0.02
SOX2P48431 AL353801.3-201ENST00000609898 542 ntBASIC14.9□□□□□ -0.02
SOX2P48431 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.9□□□□□ -0.02
SOX2P48431 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SOX2P48431 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.9□□□□□ -0.02
SOX2P48431 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
SOX2P48431 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms