Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.31■□□□□ 0.68
USP28Q96RU2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.31■□□□□ 0.68
USP28Q96RU2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.31■□□□□ 0.68
USP28Q96RU2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 PTCHD3P3-201ENST00000403073 906 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
USP28Q96RU2 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.31■□□□□ 0.68
USP28Q96RU2 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.31■□□□□ 0.68
USP28Q96RU2 AC139887.3-201ENST00000568585 713 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.31■□□□□ 0.68
USP28Q96RU2 REXO1L6P-202ENST00000619970 1078 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 AL139011.1-202ENST00000642063 584 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 AL671710.1-201ENST00000610245 2349 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.31■□□□□ 0.68
USP28Q96RU2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USP28Q96RU2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USP28Q96RU2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.3■□□□□ 0.68
USP28Q96RU2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USP28Q96RU2 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 AC087163.2-201ENST00000457299 853 ntBASIC19.3■□□□□ 0.68
USP28Q96RU2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
USP28Q96RU2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.3■□□□□ 0.68
USP28Q96RU2 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.3■□□□□ 0.68
USP28Q96RU2 AC025062.2-201ENST00000605477 670 ntBASIC19.3■□□□□ 0.68
USP28Q96RU2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.3■□□□□ 0.68
USP28Q96RU2 REXO1L3P-201ENST00000622202 1288 ntBASIC19.3■□□□□ 0.68
USP28Q96RU2 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.3■□□□□ 0.68
USP28Q96RU2 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USP28Q96RU2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 AC002310.6-201ENST00000624451 1377 ntBASIC19.3■□□□□ 0.68
USP28Q96RU2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
USP28Q96RU2 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
USP28Q96RU2 AC006504.4-201ENST00000592118 1568 ntBASIC19.29■□□□□ 0.68
USP28Q96RU2 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.29■□□□□ 0.68
USP28Q96RU2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 AC008894.3-201ENST00000624324 3103 ntBASIC19.29■□□□□ 0.68
USP28Q96RU2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.29■□□□□ 0.68
USP28Q96RU2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.29■□□□□ 0.68
USP28Q96RU2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 ELK2BP-201ENST00000415014 1224 ntBASIC19.29■□□□□ 0.68
USP28Q96RU2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP28Q96RU2 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms