Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 AP000347.1-202ENST00000435868 847 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 AC098831.1-202ENST00000438821 336 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 AC108073.2-201ENST00000464002 357 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 AP001005.1-201ENST00000571755 1248 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 OR7E47P-204ENST00000575924 449 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 AC004790.2-201ENST00000623588 572 ntBASIC19.98■□□□□ 0.79
NEK1Q96PY6 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
NEK1Q96PY6 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
NEK1Q96PY6 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 AC006538.1-201ENST00000567905 1585 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 MRPL20P1-201ENST00000400819 433 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 PMS2P1-201ENST00000431037 1228 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 AL662844.1-201ENST00000546340 181 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 AC091167.2-201ENST00000579581 588 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 AL139011.1-202ENST00000642063 584 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 SNX33P1-201ENST00000592116 1762 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 SLC22A20-204ENST00000530038 1673 ntBASIC19.97■□□□□ 0.79
NEK1Q96PY6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
NEK1Q96PY6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
NEK1Q96PY6 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 AC131009.4-201ENST00000624048 1740 ntBASIC19.96■□□□□ 0.79
NEK1Q96PY6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 HLA-J-202ENST00000469281 1241 ntBASIC19.96■□□□□ 0.79
NEK1Q96PY6 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
NEK1Q96PY6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 HLA-A-201ENST00000376802 1334 ntBASIC19.96■□□□□ 0.79
NEK1Q96PY6 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
NEK1Q96PY6 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.95■□□□□ 0.79
NEK1Q96PY6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
NEK1Q96PY6 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
NEK1Q96PY6 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms