Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
AP4E1Q9UPM8 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 HLA-A-201ENST00000376802 1334 ntBASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.55■□□□□ 0.4
AP4E1Q9UPM8 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 MRPL20P1-201ENST00000400819 433 ntBASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 AC004790.2-201ENST00000623588 572 ntBASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 AC092171.3-201ENST00000610122 2651 ntBASIC17.54■□□□□ 0.4
AP4E1Q9UPM8 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 AC108751.1-201ENST00000490852 363 ntBASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 AC013467.2-201ENST00000605472 835 ntBASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 AC006277.1-201ENST00000624348 1610 ntBASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
AP4E1Q9UPM8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms