Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SF3A1Q15459 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SF3A1Q15459 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 AP005117.1-201ENST00000584346 1413 ntBASIC19.61■□□□□ 0.73
SF3A1Q15459 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
SF3A1Q15459 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SF3A1Q15459 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.61■□□□□ 0.73
SF3A1Q15459 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 UPK3BP1-201ENST00000428678 509 ntBASIC19.61■□□□□ 0.73
SF3A1Q15459 KRT16P4-201ENST00000453883 522 ntBASIC19.61■□□□□ 0.73
SF3A1Q15459 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 FOSL1P1-201ENST00000511041 816 ntBASIC19.61■□□□□ 0.73
SF3A1Q15459 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC19.61■□□□□ 0.73
SF3A1Q15459 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.61■□□□□ 0.73
SF3A1Q15459 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.61■□□□□ 0.73
SF3A1Q15459 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.61■□□□□ 0.73
SF3A1Q15459 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 AC092171.3-201ENST00000610122 2651 ntBASIC19.61■□□□□ 0.73
SF3A1Q15459 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.61■□□□□ 0.73
SF3A1Q15459 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.61■□□□□ 0.73
SF3A1Q15459 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SF3A1Q15459 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SF3A1Q15459 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SF3A1Q15459 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SF3A1Q15459 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.6■□□□□ 0.73
SF3A1Q15459 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.59■□□□□ 0.73
SF3A1Q15459 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SF3A1Q15459 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.59■□□□□ 0.73
SF3A1Q15459 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.59■□□□□ 0.73
SF3A1Q15459 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.59■□□□□ 0.73
SF3A1Q15459 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.59■□□□□ 0.73
SF3A1Q15459 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.59■□□□□ 0.73
SF3A1Q15459 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.59■□□□□ 0.73
SF3A1Q15459 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SF3A1Q15459 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SF3A1Q15459 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 AL603756.1-201ENST00000606511 2163 ntBASIC19.59■□□□□ 0.73
SF3A1Q15459 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.59■□□□□ 0.73
SF3A1Q15459 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SF3A1Q15459 PCDHB17P-201ENST00000539533 2393 ntBASIC19.58■□□□□ 0.73
SF3A1Q15459 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms