Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
UBQLN3Q9H347 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
UBQLN3Q9H347 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.23■■□□□ 1.15
UBQLN3Q9H347 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
UBQLN3Q9H347 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.21■■□□□ 1.15
UBQLN3Q9H347 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBQLN3Q9H347 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UBQLN3Q9H347 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
UBQLN3Q9H347 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
UBQLN3Q9H347 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
UBQLN3Q9H347 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
UBQLN3Q9H347 AC129492.7-201ENST00000622992 756 ntBASIC22.19■■□□□ 1.14
UBQLN3Q9H347 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.19■■□□□ 1.14
UBQLN3Q9H347 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
UBQLN3Q9H347 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.18■■□□□ 1.14
UBQLN3Q9H347 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UBQLN3Q9H347 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UBQLN3Q9H347 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 AC004987.1-201ENST00000428627 508 ntBASIC22.17■■□□□ 1.14
UBQLN3Q9H347 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
UBQLN3Q9H347 ATP5G2P3-201ENST00000429083 425 ntBASIC22.16■■□□□ 1.14
UBQLN3Q9H347 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
UBQLN3Q9H347 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
UBQLN3Q9H347 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
UBQLN3Q9H347 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
UBQLN3Q9H347 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.16■■□□□ 1.14
UBQLN3Q9H347 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 TSPY13P-201ENST00000338964 914 ntBASIC22.15■■□□□ 1.14
UBQLN3Q9H347 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
UBQLN3Q9H347 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
UBQLN3Q9H347 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 AL033527.3-201ENST00000566366 1196 ntBASIC22.14■■□□□ 1.13
UBQLN3Q9H347 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
UBQLN3Q9H347 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC22.13■■□□□ 1.13
UBQLN3Q9H347 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
UBQLN3Q9H347 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
UBQLN3Q9H347 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
UBQLN3Q9H347 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
UBQLN3Q9H347 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
UBQLN3Q9H347 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
UBQLN3Q9H347 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 DUX4L9-201ENST00000449051 1259 ntBASIC22.1■■□□□ 1.13
UBQLN3Q9H347 SPCS2P3-201ENST00000500401 656 ntBASIC22.1■■□□□ 1.13
UBQLN3Q9H347 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.1■■□□□ 1.13
UBQLN3Q9H347 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.09■■□□□ 1.13
UBQLN3Q9H347 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms