Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL21A1Q96P44 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL21A1Q96P44 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL21A1Q96P44 AC010501.1-201ENST00000606270 1962 ntBASIC22.61■■□□□ 1.21
COL21A1Q96P44 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL21A1Q96P44 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
COL21A1Q96P44 SMPD5-203ENST00000639008 1464 ntBASIC22.6■■□□□ 1.21
COL21A1Q96P44 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.59■■□□□ 1.21
COL21A1Q96P44 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.59■■□□□ 1.21
COL21A1Q96P44 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL21A1Q96P44 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
COL21A1Q96P44 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL21A1Q96P44 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.58■■□□□ 1.21
COL21A1Q96P44 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.58■■□□□ 1.21
COL21A1Q96P44 AC025884.2-201ENST00000553429 711 ntBASIC22.58■■□□□ 1.21
COL21A1Q96P44 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
COL21A1Q96P44 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL21A1Q96P44 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
COL21A1Q96P44 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.58■■□□□ 1.2
COL21A1Q96P44 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL21A1Q96P44 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL21A1Q96P44 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL21A1Q96P44 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.57■■□□□ 1.2
COL21A1Q96P44 RARRES2P2-201ENST00000394842 485 ntBASIC22.57■■□□□ 1.2
COL21A1Q96P44 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.57■■□□□ 1.2
COL21A1Q96P44 BRD4-212ENST00000630599 726 ntTSL 2 BASIC22.57■■□□□ 1.2
COL21A1Q96P44 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL21A1Q96P44 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL21A1Q96P44 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
COL21A1Q96P44 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL21A1Q96P44 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.56■■□□□ 1.2
COL21A1Q96P44 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
COL21A1Q96P44 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL21A1Q96P44 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL21A1Q96P44 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.55■■□□□ 1.2
COL21A1Q96P44 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL21A1Q96P44 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
COL21A1Q96P44 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.54■■□□□ 1.2
COL21A1Q96P44 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.54■■□□□ 1.2
COL21A1Q96P44 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.54■■□□□ 1.2
COL21A1Q96P44 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL21A1Q96P44 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL21A1Q96P44 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL21A1Q96P44 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.53■■□□□ 1.2
COL21A1Q96P44 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.53■■□□□ 1.2
COL21A1Q96P44 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL21A1Q96P44 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL21A1Q96P44 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL21A1Q96P44 MIR3960-201ENST00000583311 91 ntBASIC22.52■■□□□ 1.2
COL21A1Q96P44 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
COL21A1Q96P44 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.52■■□□□ 1.19
COL21A1Q96P44 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL21A1Q96P44 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL21A1Q96P44 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.51■■□□□ 1.19
COL21A1Q96P44 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL21A1Q96P44 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL21A1Q96P44 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 AC007029.1-201ENST00000604183 313 ntBASIC22.51■■□□□ 1.19
COL21A1Q96P44 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
COL21A1Q96P44 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL21A1Q96P44 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL21A1Q96P44 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL21A1Q96P44 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL21A1Q96P44 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
COL21A1Q96P44 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.5■■□□□ 1.19
COL21A1Q96P44 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
COL21A1Q96P44 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL21A1Q96P44 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
COL21A1Q96P44 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL21A1Q96P44 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
COL21A1Q96P44 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
COL21A1Q96P44 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
COL21A1Q96P44 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL21A1Q96P44 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL21A1Q96P44 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL21A1Q96P44 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.48■■□□□ 1.19
COL21A1Q96P44 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL21A1Q96P44 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
COL21A1Q96P44 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
COL21A1Q96P44 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
COL21A1Q96P44 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.48■■□□□ 1.19
COL21A1Q96P44 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.47■■□□□ 1.19
COL21A1Q96P44 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 RP9P-202ENST00000450133 1212 ntBASIC22.47■■□□□ 1.19
COL21A1Q96P44 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
COL21A1Q96P44 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms