Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
RTF1Q92541 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RTF1Q92541 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RTF1Q92541 MIR4508-201ENST00000584178 70 ntBASIC31.56■■■□□ 2.64
RTF1Q92541 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RTF1Q92541 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.55■■■□□ 2.64
RTF1Q92541 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RTF1Q92541 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.55■■■□□ 2.64
RTF1Q92541 LONRF2P2-201ENST00000439212 571 ntBASIC31.55■■■□□ 2.64
RTF1Q92541 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.55■■■□□ 2.64
RTF1Q92541 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RTF1Q92541 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
RTF1Q92541 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
RTF1Q92541 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.54■■■□□ 2.64
RTF1Q92541 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC31.53■■■□□ 2.64
RTF1Q92541 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RTF1Q92541 AL451085.2-201ENST00000605085 799 ntBASIC31.53■■■□□ 2.64
RTF1Q92541 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
RTF1Q92541 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC31.53■■■□□ 2.64
RTF1Q92541 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RTF1Q92541 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.52■■■□□ 2.64
RTF1Q92541 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.52■■■□□ 2.64
RTF1Q92541 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.52■■■□□ 2.64
RTF1Q92541 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
RTF1Q92541 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC31.52■■■□□ 2.64
RTF1Q92541 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
RTF1Q92541 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
RTF1Q92541 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.51■■■□□ 2.63
RTF1Q92541 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RTF1Q92541 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
RTF1Q92541 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
RTF1Q92541 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
RTF1Q92541 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
RTF1Q92541 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.49■■■□□ 2.63
RTF1Q92541 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
RTF1Q92541 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC31.49■■■□□ 2.63
RTF1Q92541 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.49■■■□□ 2.63
RTF1Q92541 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.49■■■□□ 2.63
RTF1Q92541 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC31.49■■■□□ 2.63
RTF1Q92541 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RTF1Q92541 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.49■■■□□ 2.63
RTF1Q92541 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
RTF1Q92541 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RTF1Q92541 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.47■■■□□ 2.63
RTF1Q92541 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
RTF1Q92541 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
RTF1Q92541 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
RTF1Q92541 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
RTF1Q92541 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
RTF1Q92541 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
RTF1Q92541 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
RTF1Q92541 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC31.46■■■□□ 2.63
RTF1Q92541 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.45■■■□□ 2.63
RTF1Q92541 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.45■■■□□ 2.63
RTF1Q92541 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
RTF1Q92541 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
RTF1Q92541 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
RTF1Q92541 AL035685.1-201ENST00000636663 812 ntBASIC31.45■■■□□ 2.63
RTF1Q92541 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
RTF1Q92541 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.45■■■□□ 2.62
RTF1Q92541 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
RTF1Q92541 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
RTF1Q92541 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.44■■■□□ 2.62
RTF1Q92541 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RTF1Q92541 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC31.43■■■□□ 2.62
RTF1Q92541 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RTF1Q92541 AC103724.3-201ENST00000564481 992 ntBASIC31.43■■■□□ 2.62
RTF1Q92541 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.43■■■□□ 2.62
RTF1Q92541 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RTF1Q92541 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RTF1Q92541 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RTF1Q92541 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.42■■■□□ 2.62
RTF1Q92541 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RTF1Q92541 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
RTF1Q92541 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.41■■■□□ 2.62
RTF1Q92541 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.41■■■□□ 2.62
RTF1Q92541 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
RTF1Q92541 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
RTF1Q92541 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC31.4■■■□□ 2.62
RTF1Q92541 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RTF1Q92541 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
RTF1Q92541 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
RTF1Q92541 AL031848.2-201ENST00000607670 837 ntBASIC31.39■■■□□ 2.62
RTF1Q92541 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
RTF1Q92541 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.38■■■□□ 2.61
RTF1Q92541 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
RTF1Q92541 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
RTF1Q92541 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.38■■■□□ 2.61
RTF1Q92541 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RTF1Q92541 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RTF1Q92541 AC009299.2-201ENST00000482477 511 ntBASIC31.37■■■□□ 2.61
RTF1Q92541 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.37■■■□□ 2.61
RTF1Q92541 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
RTF1Q92541 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC31.37■■■□□ 2.61
RTF1Q92541 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms