Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
COL1A1P02452 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
COL1A1P02452 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL1A1P02452 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL1A1P02452 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL1A1P02452 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
COL1A1P02452 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.37■■■□□ 2.29
COL1A1P02452 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC29.36■■■□□ 2.29
COL1A1P02452 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
COL1A1P02452 THA1P-201ENST00000590384 1145 ntBASIC29.36■■■□□ 2.29
COL1A1P02452 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
COL1A1P02452 AC019171.1-201ENST00000601251 1056 ntBASIC29.36■■■□□ 2.29
COL1A1P02452 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
COL1A1P02452 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.35■■■□□ 2.29
COL1A1P02452 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
COL1A1P02452 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC29.34■■■□□ 2.29
COL1A1P02452 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL1A1P02452 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL1A1P02452 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
COL1A1P02452 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
COL1A1P02452 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
COL1A1P02452 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL1A1P02452 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
COL1A1P02452 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
COL1A1P02452 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
COL1A1P02452 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
COL1A1P02452 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.33■■■□□ 2.29
COL1A1P02452 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
COL1A1P02452 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
COL1A1P02452 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL1A1P02452 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC29.31■■■□□ 2.28
COL1A1P02452 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
COL1A1P02452 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC29.31■■■□□ 2.28
COL1A1P02452 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
COL1A1P02452 LONRF2P2-201ENST00000439212 571 ntBASIC29.31■■■□□ 2.28
COL1A1P02452 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL1A1P02452 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC29.3■■■□□ 2.28
COL1A1P02452 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL1A1P02452 MTURN-203ENST00000409688 843 ntTSL 2 BASIC29.3■■■□□ 2.28
COL1A1P02452 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
COL1A1P02452 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
COL1A1P02452 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC29.29■■■□□ 2.28
COL1A1P02452 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC29.29■■■□□ 2.28
COL1A1P02452 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL1A1P02452 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
COL1A1P02452 AL356441.2-201ENST00000443009 864 ntBASIC29.29■■■□□ 2.28
COL1A1P02452 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
COL1A1P02452 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL1A1P02452 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL1A1P02452 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.28■■■□□ 2.28
COL1A1P02452 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC29.28■■■□□ 2.28
COL1A1P02452 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC29.28■■■□□ 2.28
COL1A1P02452 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC29.28■■■□□ 2.28
COL1A1P02452 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL1A1P02452 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL1A1P02452 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
COL1A1P02452 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
COL1A1P02452 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC29.27■■■□□ 2.28
COL1A1P02452 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL1A1P02452 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL1A1P02452 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
COL1A1P02452 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL1A1P02452 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC29.26■■■□□ 2.27
COL1A1P02452 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
COL1A1P02452 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
COL1A1P02452 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC29.26■■■□□ 2.27
COL1A1P02452 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
COL1A1P02452 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL1A1P02452 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL1A1P02452 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL1A1P02452 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
COL1A1P02452 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC29.25■■■□□ 2.27
COL1A1P02452 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
COL1A1P02452 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.25■■■□□ 2.27
COL1A1P02452 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
COL1A1P02452 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
COL1A1P02452 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC29.24■■■□□ 2.27
COL1A1P02452 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC29.23■■■□□ 2.27
COL1A1P02452 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC29.23■■■□□ 2.27
COL1A1P02452 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC29.23■■■□□ 2.27
COL1A1P02452 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL1A1P02452 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
COL1A1P02452 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL1A1P02452 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL1A1P02452 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC29.22■■■□□ 2.27
COL1A1P02452 Z92544.1-202ENST00000571933 1220 ntBASIC29.22■■■□□ 2.27
COL1A1P02452 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC29.21■■■□□ 2.27
COL1A1P02452 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC29.21■■■□□ 2.27
COL1A1P02452 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
COL1A1P02452 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.27
COL1A1P02452 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC29.2■■■□□ 2.27
COL1A1P02452 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
COL1A1P02452 RNF146-205ENST00000477776 762 ntTSL 3 BASIC29.2■■■□□ 2.26
COL1A1P02452 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC29.2■■■□□ 2.26
COL1A1P02452 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.2■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 1273.5 ms