Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC32.28■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AC020928.2-201ENST00000588717 2197 ntBASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC32.27■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.26■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC32.26■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC32.25■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC32.25■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC32.25■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 AC126177.7-201ENST00000547904 679 ntBASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 AC092296.2-201ENST00000589470 999 ntBASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC32.24■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC32.23■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC32.22■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC32.22■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC32.21■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 THA1P-201ENST00000590384 1145 ntBASIC32.2■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC32.2■■■□□ 2.75
SENP3-EIF4A1A0A087X0R7 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.2■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC32.2■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 DUSP8P4-201ENST00000399538 1761 ntBASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 AC025884.2-201ENST00000553429 711 ntBASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 AC096887.2-201ENST00000623443 1957 ntBASIC32.19■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC32.16■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC32.15■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 SMPD5-203ENST00000639008 1464 ntBASIC32.15■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC32.14■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SENP3-EIF4A1A0A087X0R7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC32.12■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC32.12■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC32.11■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 AC010501.1-201ENST00000606270 1962 ntBASIC32.08■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC32.07■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC32.07■■■□□ 2.73
SENP3-EIF4A1A0A087X0R7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 KRT18P60-201ENST00000312876 1297 ntBASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC32.07■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC32.06■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC32.06■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC32.06■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC32.06■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SENP3-EIF4A1A0A087X0R7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms