Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
FOXA1P55317 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
FOXA1P55317 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 AL590787.1-201ENST00000568856 1315 ntBASIC16.45■□□□□ 0.22
FOXA1P55317 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 AL139384.1-201ENST00000612143 3047 ntBASIC16.45■□□□□ 0.22
FOXA1P55317 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.45■□□□□ 0.22
FOXA1P55317 BX005266.1-201ENST00000473402 457 ntBASIC16.45■□□□□ 0.22
FOXA1P55317 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.45■□□□□ 0.22
FOXA1P55317 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.45■□□□□ 0.22
FOXA1P55317 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 AC138894.3-201ENST00000603787 634 ntBASIC16.45■□□□□ 0.22
FOXA1P55317 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
FOXA1P55317 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
FOXA1P55317 AP005117.1-201ENST00000584346 1413 ntBASIC16.45■□□□□ 0.22
FOXA1P55317 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.45■□□□□ 0.22
FOXA1P55317 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.44■□□□□ 0.22
FOXA1P55317 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 AC243591.1-201ENST00000452967 1364 ntBASIC16.44■□□□□ 0.22
FOXA1P55317 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
FOXA1P55317 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
FOXA1P55317 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.44■□□□□ 0.22
FOXA1P55317 AL591684.3-201ENST00000605187 298 ntBASIC16.44■□□□□ 0.22
FOXA1P55317 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.44■□□□□ 0.22
FOXA1P55317 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
FOXA1P55317 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 LINC00895-201ENST00000629028 1637 ntBASIC16.44■□□□□ 0.22
FOXA1P55317 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.44■□□□□ 0.22
FOXA1P55317 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
FOXA1P55317 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
FOXA1P55317 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
FOXA1P55317 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
FOXA1P55317 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
FOXA1P55317 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
FOXA1P55317 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.43■□□□□ 0.22
FOXA1P55317 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms