Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 PCDHA3-202ENST00000532566 4594 ntBASIC12.82□□□□□ -0.36
HLA-DQA1P01909 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 KRT16P1-201ENST00000399124 1418 ntBASIC12.82□□□□□ -0.36
HLA-DQA1P01909 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 GCSHP5-201ENST00000443090 522 ntBASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 AC011298.2-201ENST00000617989 482 ntBASIC12.82□□□□□ -0.36
HLA-DQA1P01909 CR392000.1-201ENST00000624770 1228 ntBASIC12.82□□□□□ -0.36
HLA-DQA1P01909 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DQA1P01909 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AL135905.2-201ENST00000584934 1404 ntBASIC12.81□□□□□ -0.36
HLA-DQA1P01909 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TNRC18P2-201ENST00000417666 2714 ntBASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FAM207BP-201ENST00000447172 505 ntBASIC12.81□□□□□ -0.36
HLA-DQA1P01909 UBE2SP1-201ENST00000450587 669 ntBASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 AC073347.1-201ENST00000421633 2643 ntBASIC12.81□□□□□ -0.36
HLA-DQA1P01909 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.81□□□□□ -0.36
HLA-DQA1P01909 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms