Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 NKILA-202ENST00000614771 2598 ntBASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC1Q9NTX5 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AGGF1P2-201ENST00000426656 2106 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AL353732.1-201ENST00000569618 1459 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 ZNF259P1-201ENST00000407656 1365 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AC005412.3-201ENST00000580309 715 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 MIR4492-201ENST00000581627 80 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 AC013467.2-201ENST00000605472 835 ntBASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC1Q9NTX5 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.9
ECHDC1Q9NTX5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ECHDC1Q9NTX5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.64■□□□□ 0.9
ECHDC1Q9NTX5 AC006277.1-201ENST00000624348 1610 ntBASIC20.64■□□□□ 0.9
ECHDC1Q9NTX5 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ECHDC1Q9NTX5 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 AC011676.5-201ENST00000624864 2660 ntBASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.64■□□□□ 0.89
ECHDC1Q9NTX5 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ECHDC1Q9NTX5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms