Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 AL645728.1-201ENST00000366221 2101 ntBASIC18.1■□□□□ 0.49
CISHQ9NSE2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CISHQ9NSE2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.1■□□□□ 0.49
CISHQ9NSE2 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 AC009053.2-201ENST00000563701 2365 ntBASIC18.09■□□□□ 0.49
CISHQ9NSE2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 CRYGEP-201ENST00000412192 528 ntBASIC18.09■□□□□ 0.49
CISHQ9NSE2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC18.09■□□□□ 0.49
CISHQ9NSE2 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CISHQ9NSE2 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.08■□□□□ 0.49
CISHQ9NSE2 PKD1P1-201ENST00000458669 6805 ntBASIC18.08■□□□□ 0.49
CISHQ9NSE2 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.08■□□□□ 0.49
CISHQ9NSE2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.08■□□□□ 0.49
CISHQ9NSE2 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
CISHQ9NSE2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 AC078925.2-201ENST00000624013 1973 ntBASIC18.08■□□□□ 0.49
CISHQ9NSE2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.08■□□□□ 0.49
CISHQ9NSE2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CISHQ9NSE2 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 IGLL3P-201ENST00000412472 434 ntBASIC18.08■□□□□ 0.48
CISHQ9NSE2 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.08■□□□□ 0.48
CISHQ9NSE2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 NKILA-202ENST00000614771 2598 ntBASIC18.08■□□□□ 0.48
CISHQ9NSE2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CISHQ9NSE2 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
CISHQ9NSE2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.07■□□□□ 0.48
CISHQ9NSE2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CISHQ9NSE2 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CISHQ9NSE2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms