Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC01023-201ENST00000606054 436 ntBASIC18.38■□□□□ 0.53
CCDC42Q96M95 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC42Q96M95 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC42Q96M95 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC091607.1-201ENST00000490318 1060 ntBASIC18.37■□□□□ 0.53
CCDC42Q96M95 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.37■□□□□ 0.53
CCDC42Q96M95 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 PCDHA1-201ENST00000378133 2726 ntBASIC18.37■□□□□ 0.53
CCDC42Q96M95 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AL513523.2-202ENST00000427283 2040 ntBASIC18.37■□□□□ 0.53
CCDC42Q96M95 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCDC42Q96M95 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.37■□□□□ 0.53
CCDC42Q96M95 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.36■□□□□ 0.53
CCDC42Q96M95 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCDC42Q96M95 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms