Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
YBX1P67809 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
YBX1P67809 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
YBX1P67809 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
YBX1P67809 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.59■□□□□ 0.25
YBX1P67809 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.58■□□□□ 0.25
YBX1P67809 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.58■□□□□ 0.25
YBX1P67809 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.58■□□□□ 0.25
YBX1P67809 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.58■□□□□ 0.25
YBX1P67809 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
YBX1P67809 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.58■□□□□ 0.24
YBX1P67809 PTCHD3P3-201ENST00000403073 906 ntBASIC16.58■□□□□ 0.24
YBX1P67809 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.58■□□□□ 0.24
YBX1P67809 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.58■□□□□ 0.24
YBX1P67809 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.58■□□□□ 0.24
YBX1P67809 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.58■□□□□ 0.24
YBX1P67809 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.58■□□□□ 0.24
YBX1P67809 AL662844.1-201ENST00000546340 181 ntBASIC16.58■□□□□ 0.24
YBX1P67809 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.58■□□□□ 0.24
YBX1P67809 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
YBX1P67809 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
YBX1P67809 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
YBX1P67809 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
YBX1P67809 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
YBX1P67809 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
YBX1P67809 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.57■□□□□ 0.24
YBX1P67809 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
YBX1P67809 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.57■□□□□ 0.24
YBX1P67809 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 AC105339.3-201ENST00000560043 636 ntBASIC16.57■□□□□ 0.24
YBX1P67809 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.57■□□□□ 0.24
YBX1P67809 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
YBX1P67809 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 AC117500.6-201ENST00000624871 588 ntBASIC16.57■□□□□ 0.24
YBX1P67809 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.57■□□□□ 0.24
YBX1P67809 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
YBX1P67809 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.57■□□□□ 0.24
YBX1P67809 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms