Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 AL391256.1-201ENST00000443260 1855 ntBASIC17.67■□□□□ 0.42
PTPN9P43378 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PTPN9P43378 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.66■□□□□ 0.42
PTPN9P43378 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
PTPN9P43378 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PTPN9P43378 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.66■□□□□ 0.42
PTPN9P43378 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.66■□□□□ 0.42
PTPN9P43378 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 AC108751.1-201ENST00000490852 363 ntBASIC17.66■□□□□ 0.42
PTPN9P43378 UNC93B6-202ENST00000528242 690 ntBASIC17.66■□□□□ 0.42
PTPN9P43378 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.66■□□□□ 0.42
PTPN9P43378 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.66■□□□□ 0.42
PTPN9P43378 AC004790.2-201ENST00000623588 572 ntBASIC17.66■□□□□ 0.42
PTPN9P43378 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PTPN9P43378 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
PTPN9P43378 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PTPN9P43378 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PTPN9P43378 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.66■□□□□ 0.42
PTPN9P43378 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 AC006277.1-201ENST00000624348 1610 ntBASIC17.65■□□□□ 0.42
PTPN9P43378 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.65■□□□□ 0.42
PTPN9P43378 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
PTPN9P43378 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 PRSS29P-201ENST00000440800 595 ntBASIC17.65■□□□□ 0.42
PTPN9P43378 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
PTPN9P43378 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.65■□□□□ 0.42
PTPN9P43378 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.65■□□□□ 0.42
PTPN9P43378 MIR4492-201ENST00000581627 80 ntBASIC17.65■□□□□ 0.42
PTPN9P43378 MPDU1-223ENST00000582151 728 ntBASIC17.65■□□□□ 0.42
PTPN9P43378 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 AC010654.1-201ENST00000615722 808 ntBASIC17.65■□□□□ 0.42
PTPN9P43378 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.65■□□□□ 0.42
PTPN9P43378 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PTPN9P43378 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PTPN9P43378 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.42
PTPN9P43378 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PTPN9P43378 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
PTPN9P43378 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.64■□□□□ 0.42
PTPN9P43378 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.64■□□□□ 0.41
PTPN9P43378 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PTPN9P43378 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PTPN9P43378 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms