Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 AL590326.2-201ENST00000625139 305 ntBASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 AP000550.4-202ENST00000639755 178 ntBASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 LINC00895-201ENST00000629028 1637 ntBASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PCDHA3Q9Y5H8 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.81■□□□□ 0.44
PCDHA3Q9Y5H8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AL662844.4-201ENST00000606367 2838 ntBASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 FAM210CP-201ENST00000445714 574 ntBASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 AL162727.3-201ENST00000635661 2787 ntBASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHA3Q9Y5H8 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 PRYP5-201ENST00000451909 266 ntBASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 AC099336.1-202ENST00000602961 463 ntBASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 AC010331.1-201ENST00000611423 582 ntBASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHA3Q9Y5H8 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms