Protein–RNA interactions for Protein: A0A096LP49

CCDC187, Coiled-coil domain-containing protein 187, humanhuman

Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC187A0A096LP49 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 LYSMD4-203ENST00000378904 2122 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 FAM207CP-201ENST00000443486 507 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AL512638.1-201ENST00000457493 794 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 RN7SL204P-201ENST00000582831 262 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AL158211.3-201ENST00000607385 239 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AL390754.1-201ENST00000619088 582 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AL035252.4-201ENST00000624174 288 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AC008677.1-201ENST00000519230 1561 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 LINC00304-203ENST00000565008 1864 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 AC063926.2-201ENST00000623766 1308 ntBASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC187A0A096LP49 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 SLC25A39P2-201ENST00000537614 270 ntBASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 MIR6080-201ENST00000617359 66 ntBASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC187A0A096LP49 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 AC069120.2-201ENST00000524091 540 ntBASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC187A0A096LP49 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms