Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.57■□□□□ 0.4
VPS28Q9UK41 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 AC004790.2-201ENST00000623588 572 ntBASIC17.57■□□□□ 0.4
VPS28Q9UK41 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 AP001094.4-201ENST00000579008 2176 ntBASIC17.57■□□□□ 0.4
VPS28Q9UK41 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS28Q9UK41 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS28Q9UK41 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 CROCCP2-202ENST00000412962 2773 ntBASIC17.56■□□□□ 0.4
VPS28Q9UK41 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 MRPL20P1-201ENST00000400819 433 ntBASIC17.56■□□□□ 0.4
VPS28Q9UK41 CRYGEP-201ENST00000412192 528 ntBASIC17.56■□□□□ 0.4
VPS28Q9UK41 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 FAM197Y3-203ENST00000618346 717 ntBASIC17.56■□□□□ 0.4
VPS28Q9UK41 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS28Q9UK41 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
VPS28Q9UK41 OR6D1P-203ENST00000641209 4860 ntBASIC17.55■□□□□ 0.4
VPS28Q9UK41 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 AC022211.2-201ENST00000585075 2527 ntBASIC17.55■□□□□ 0.4
VPS28Q9UK41 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 KRT18P3-201ENST00000451602 1288 ntBASIC17.55■□□□□ 0.4
VPS28Q9UK41 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 AC093525.9-201ENST00000624961 1746 ntBASIC17.55■□□□□ 0.4
VPS28Q9UK41 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS28Q9UK41 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
VPS28Q9UK41 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms