Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.88□□□□□ -0.35
FOXA3P55318 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
FOXA3P55318 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 AMT-250ENST00000637682 1823 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
FOXA3P55318 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC12.88□□□□□ -0.35
FOXA3P55318 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA3P55318 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 SLC25A1P2-201ENST00000430693 912 ntBASIC12.87□□□□□ -0.35
FOXA3P55318 AC002558.1-201ENST00000488906 803 ntBASIC12.87□□□□□ -0.35
FOXA3P55318 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA3P55318 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.87□□□□□ -0.35
FOXA3P55318 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 LINC02228-204ENST00000642115 2962 ntBASIC12.87□□□□□ -0.35
FOXA3P55318 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.87□□□□□ -0.35
FOXA3P55318 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 SRI-203ENST00000419179 1307 ntTSL 2 BASIC12.87□□□□□ -0.35
FOXA3P55318 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
FOXA3P55318 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.86□□□□□ -0.35
FOXA3P55318 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
FOXA3P55318 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
FOXA3P55318 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
FOXA3P55318 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms