Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC22.2■■□□□ 1.14
COL18A1P39060 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC22.2■■□□□ 1.14
COL18A1P39060 AL079307.3-201ENST00000556114 283 ntBASIC22.2■■□□□ 1.14
COL18A1P39060 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.2■■□□□ 1.14
COL18A1P39060 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC22.2■■□□□ 1.14
COL18A1P39060 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC22.2■■□□□ 1.14
COL18A1P39060 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
COL18A1P39060 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC22.2■■□□□ 1.14
COL18A1P39060 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC22.2■■□□□ 1.14
COL18A1P39060 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL18A1P39060 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL18A1P39060 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC22.19■■□□□ 1.14
COL18A1P39060 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
COL18A1P39060 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC22.19■■□□□ 1.14
COL18A1P39060 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
COL18A1P39060 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
COL18A1P39060 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
COL18A1P39060 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC22.19■■□□□ 1.14
COL18A1P39060 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC22.19■■□□□ 1.14
COL18A1P39060 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
COL18A1P39060 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
COL18A1P39060 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
COL18A1P39060 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.18■■□□□ 1.14
COL18A1P39060 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
COL18A1P39060 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
COL18A1P39060 RASL12-203ENST00000434605 982 ntTSL 2 BASIC22.18■■□□□ 1.14
COL18A1P39060 AC132938.2-201ENST00000579188 680 ntBASIC22.18■■□□□ 1.14
COL18A1P39060 AL591163.1-201ENST00000641757 987 ntBASIC22.18■■□□□ 1.14
COL18A1P39060 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL18A1P39060 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC22.18■■□□□ 1.14
COL18A1P39060 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC22.18■■□□□ 1.14
COL18A1P39060 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC22.18■■□□□ 1.14
COL18A1P39060 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
COL18A1P39060 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
COL18A1P39060 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC22.18■■□□□ 1.14
COL18A1P39060 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
COL18A1P39060 SNX33P1-201ENST00000592116 1762 ntBASIC22.18■■□□□ 1.14
COL18A1P39060 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC22.18■■□□□ 1.14
COL18A1P39060 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC22.17■■□□□ 1.14
COL18A1P39060 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
COL18A1P39060 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 AC004408.2-201ENST00000623613 2777 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC22.17■■□□□ 1.14
COL18A1P39060 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
COL18A1P39060 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC22.17■■□□□ 1.14
COL18A1P39060 MIR1909-201ENST00000411312 80 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 KRT17P7-201ENST00000451704 1104 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 SPTSSB-204ENST00000617024 1292 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC22.17■■□□□ 1.14
COL18A1P39060 AC138969.3-201ENST00000546612 1459 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 AC138932.2-201ENST00000548268 1459 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 AC126755.4-201ENST00000549796 1459 ntBASIC22.17■■□□□ 1.14
COL18A1P39060 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
COL18A1P39060 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
COL18A1P39060 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
COL18A1P39060 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC22.16■■□□□ 1.14
COL18A1P39060 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC22.16■■□□□ 1.14
COL18A1P39060 AC105021.1-202ENST00000570572 669 ntBASIC22.16■■□□□ 1.14
COL18A1P39060 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC22.16■■□□□ 1.14
COL18A1P39060 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC22.16■■□□□ 1.14
COL18A1P39060 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC22.16■■□□□ 1.14
COL18A1P39060 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
COL18A1P39060 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
COL18A1P39060 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC22.16■■□□□ 1.14
COL18A1P39060 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL18A1P39060 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL18A1P39060 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
COL18A1P39060 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
COL18A1P39060 SLC7A15P-201ENST00000424028 1363 ntBASIC22.15■■□□□ 1.14
COL18A1P39060 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL18A1P39060 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
COL18A1P39060 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC22.15■■□□□ 1.14
COL18A1P39060 PTPA-220ENST00000436883 532 ntTSL 4 BASIC22.15■■□□□ 1.14
COL18A1P39060 RNA5SP410-201ENST00000516285 106 ntBASIC22.15■■□□□ 1.14
COL18A1P39060 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC22.15■■□□□ 1.14
COL18A1P39060 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms