Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 AC105020.1-201ENST00000435356 2205 ntBASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS9D1Q9Y2B5 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AL021920.2-201ENST00000624828 1351 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 PCDHA12-202ENST00000613593 2588 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 BX005266.1-201ENST00000473402 457 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 NKAPP1-205ENST00000585790 367 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AC008608.2-201ENST00000606089 416 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AL353135.1-201ENST00000606729 504 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 REXO1L6P-202ENST00000619970 1078 ntBASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 LINC01670-203ENST00000624859 977 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS9D1Q9Y2B5 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS9D1Q9Y2B5 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS9D1Q9Y2B5 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms