Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 AD001527.2-201ENST00000622994 785 ntBASIC15.4■□□□□ 0.06
PTP4A1Q93096 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 LINC02199-201ENST00000506655 2702 ntBASIC15.4■□□□□ 0.06
PTP4A1Q93096 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.4■□□□□ 0.06
PTP4A1Q93096 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
PTP4A1Q93096 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 AL645728.1-201ENST00000366221 2101 ntBASIC15.39■□□□□ 0.05
PTP4A1Q93096 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 TSSC2-201ENST00000450217 709 ntBASIC15.39■□□□□ 0.05
PTP4A1Q93096 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 AC009533.2-201ENST00000543664 586 ntBASIC15.39■□□□□ 0.05
PTP4A1Q93096 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PTP4A1Q93096 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PTP4A1Q93096 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 AC091607.1-201ENST00000490318 1060 ntBASIC15.38■□□□□ 0.05
PTP4A1Q93096 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PTP4A1Q93096 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PTP4A1Q93096 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms