Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 KRT8P23-201ENST00000560090 1207 ntBASIC20.06■□□□□ 0.8
RHBDL3P58872 SPCS2P1-201ENST00000561636 679 ntBASIC20.06■□□□□ 0.8
RHBDL3P58872 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RHBDL3P58872 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RHBDL3P58872 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RHBDL3P58872 AP001059.3-201ENST00000619053 235 ntBASIC20.06■□□□□ 0.8
RHBDL3P58872 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.06■□□□□ 0.8
RHBDL3P58872 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.06■□□□□ 0.8
RHBDL3P58872 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.06■□□□□ 0.8
RHBDL3P58872 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
RHBDL3P58872 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
RHBDL3P58872 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RHBDL3P58872 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.06■□□□□ 0.8
RHBDL3P58872 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RHBDL3P58872 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.06■□□□□ 0.8
RHBDL3P58872 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RHBDL3P58872 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC108860.2-201ENST00000562760 2183 ntBASIC20.05■□□□□ 0.8
RHBDL3P58872 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 HNRNPFP1-201ENST00000391730 1133 ntBASIC20.05■□□□□ 0.8
RHBDL3P58872 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.05■□□□□ 0.8
RHBDL3P58872 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC124947.2-201ENST00000547118 1133 ntBASIC20.05■□□□□ 0.8
RHBDL3P58872 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.05■□□□□ 0.8
RHBDL3P58872 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC20.05■□□□□ 0.8
RHBDL3P58872 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 AL021920.2-201ENST00000624828 1351 ntBASIC20.05■□□□□ 0.8
RHBDL3P58872 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 LINC00895-201ENST00000629028 1637 ntBASIC20.05■□□□□ 0.8
RHBDL3P58872 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RHBDL3P58872 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.05■□□□□ 0.8
RHBDL3P58872 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
RHBDL3P58872 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
RHBDL3P58872 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RHBDL3P58872 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC20.04■□□□□ 0.8
RHBDL3P58872 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 AC016027.1-202ENST00000607927 1699 ntBASIC20.04■□□□□ 0.8
RHBDL3P58872 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
RHBDL3P58872 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RHBDL3P58872 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 AC051619.7-201ENST00000568314 623 ntBASIC20.04■□□□□ 0.8
RHBDL3P58872 MIR3197-201ENST00000582241 73 ntBASIC20.04■□□□□ 0.8
RHBDL3P58872 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.04■□□□□ 0.8
RHBDL3P58872 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RHBDL3P58872 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RHBDL3P58872 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.04■□□□□ 0.8
RHBDL3P58872 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.03■□□□□ 0.8
RHBDL3P58872 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.03■□□□□ 0.8
RHBDL3P58872 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RHBDL3P58872 MIR346-201ENST00000362234 95 ntBASIC20.03■□□□□ 0.8
RHBDL3P58872 RBPMS2P1-201ENST00000437762 623 ntBASIC20.03■□□□□ 0.8
RHBDL3P58872 SPDYE14P-201ENST00000442619 822 ntBASIC20.03■□□□□ 0.8
RHBDL3P58872 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.03■□□□□ 0.8
RHBDL3P58872 BCRP1-201ENST00000444246 691 ntBASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms