Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CTCFP49711 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CTCFP49711 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.7■□□□□ 0.74
CTCFP49711 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.69■□□□□ 0.74
CTCFP49711 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC19.69■□□□□ 0.74
CTCFP49711 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 MIR346-201ENST00000362234 95 ntBASIC19.69■□□□□ 0.74
CTCFP49711 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
CTCFP49711 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.69■□□□□ 0.74
CTCFP49711 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 SNX29P1-201ENST00000548357 1007 ntBASIC19.69■□□□□ 0.74
CTCFP49711 MIR4515-201ENST00000584082 81 ntBASIC19.69■□□□□ 0.74
CTCFP49711 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
CTCFP49711 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
CTCFP49711 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.69■□□□□ 0.74
CTCFP49711 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC19.69■□□□□ 0.74
CTCFP49711 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CTCFP49711 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CTCFP49711 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.68■□□□□ 0.74
CTCFP49711 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.68■□□□□ 0.74
CTCFP49711 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CTCFP49711 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 GNAQP1-201ENST00000444815 1067 ntBASIC19.68■□□□□ 0.74
CTCFP49711 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.68■□□□□ 0.74
CTCFP49711 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC19.68■□□□□ 0.74
CTCFP49711 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CTCFP49711 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.68■□□□□ 0.74
CTCFP49711 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.68■□□□□ 0.74
CTCFP49711 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CTCFP49711 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.67■□□□□ 0.74
CTCFP49711 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.67■□□□□ 0.74
CTCFP49711 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.67■□□□□ 0.74
CTCFP49711 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CTCFP49711 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CTCFP49711 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 ACTG1P4-201ENST00000425123 1122 ntBASIC19.67■□□□□ 0.74
CTCFP49711 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC19.67■□□□□ 0.74
CTCFP49711 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.67■□□□□ 0.74
CTCFP49711 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 RNA5SP423-201ENST00000517127 109 ntBASIC19.67■□□□□ 0.74
CTCFP49711 IGHV3-52-201ENST00000519770 353 ntBASIC19.67■□□□□ 0.74
CTCFP49711 AC027307.2-201ENST00000591252 911 ntBASIC19.67■□□□□ 0.74
CTCFP49711 AC018529.1-201ENST00000613063 361 ntBASIC19.67■□□□□ 0.74
CTCFP49711 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CTCFP49711 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms