Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 AC003669.1-201ENST00000334569 611 ntBASIC16.12■□□□□ 0.17
RFX3P48380 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 KRT18P31-201ENST00000506277 1292 ntBASIC16.12■□□□□ 0.17
RFX3P48380 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.12■□□□□ 0.17
RFX3P48380 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 LINC01711-201ENST00000598340 967 ntBASIC16.12■□□□□ 0.17
RFX3P48380 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
RFX3P48380 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 AC079328.2-201ENST00000561241 3354 ntBASIC16.12■□□□□ 0.17
RFX3P48380 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RFX3P48380 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX3P48380 AD001527.2-201ENST00000622994 785 ntBASIC16.11■□□□□ 0.17
RFX3P48380 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
RFX3P48380 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
RFX3P48380 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX3P48380 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX3P48380 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX3P48380 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 AC009336.1-201ENST00000608941 1553 ntBASIC16.1■□□□□ 0.17
RFX3P48380 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX3P48380 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX3P48380 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RFX3P48380 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX3P48380 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RFX3P48380 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 ABCD1P5-201ENST00000445663 754 ntBASIC16.1■□□□□ 0.17
RFX3P48380 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.1■□□□□ 0.17
RFX3P48380 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.1■□□□□ 0.17
RFX3P48380 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX3P48380 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX3P48380 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.1■□□□□ 0.17
RFX3P48380 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RFX3P48380 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.1■□□□□ 0.17
RFX3P48380 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX3P48380 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX3P48380 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms