Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 IGHV3-42-201ENST00000520410 361 ntBASIC18.51■□□□□ 0.55
HERC6Q8IVU3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
HERC6Q8IVU3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 AC026150.2-201ENST00000564693 1156 ntBASIC18.5■□□□□ 0.55
HERC6Q8IVU3 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 AC008677.1-201ENST00000519230 1561 ntBASIC18.5■□□□□ 0.55
HERC6Q8IVU3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HERC6Q8IVU3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 IGHV3-62-201ENST00000520057 340 ntBASIC18.49■□□□□ 0.55
HERC6Q8IVU3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 AC107918.2-201ENST00000530817 355 ntBASIC18.49■□□□□ 0.55
HERC6Q8IVU3 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HERC6Q8IVU3 AC046185.3-201ENST00000623228 1824 ntBASIC18.49■□□□□ 0.55
HERC6Q8IVU3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 LTB4R2-202ENST00000528054 3092 ntBASIC18.48■□□□□ 0.55
HERC6Q8IVU3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 AL512638.1-201ENST00000457493 794 ntBASIC18.48■□□□□ 0.55
HERC6Q8IVU3 AP005018.1-201ENST00000525475 301 ntBASIC18.48■□□□□ 0.55
HERC6Q8IVU3 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 MIR4515-201ENST00000584082 81 ntBASIC18.48■□□□□ 0.55
HERC6Q8IVU3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 AL161645.1-201ENST00000622716 1255 ntBASIC18.48■□□□□ 0.55
HERC6Q8IVU3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.48■□□□□ 0.55
HERC6Q8IVU3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HERC6Q8IVU3 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HERC6Q8IVU3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
HERC6Q8IVU3 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms