Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC116407.3-201ENST00000623905 1129 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 AL805961.1-202ENST00000641562 540 ntBASIC16.76■□□□□ 0.27
VRK3Q8IV63 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VRK3Q8IV63 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.76■□□□□ 0.27
VRK3Q8IV63 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 RPS2P28-201ENST00000314255 741 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 PAWRP1-201ENST00000451083 565 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 AL662844.1-201ENST00000546340 181 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 TERC-201ENST00000602385 541 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 AC117500.6-201ENST00000624871 588 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.75■□□□□ 0.27
VRK3Q8IV63 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VRK3Q8IV63 AD000864.1-201ENST00000624076 2295 ntBASIC16.75■□□□□ 0.27
VRK3Q8IV63 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 AC020916.1-201ENST00000587762 1774 ntBASIC16.74■□□□□ 0.27
VRK3Q8IV63 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 PI4KAP1-204ENST00000612579 1703 ntBASIC16.74■□□□□ 0.27
VRK3Q8IV63 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 AC026396.1-201ENST00000419388 421 ntBASIC16.74■□□□□ 0.27
VRK3Q8IV63 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.74■□□□□ 0.27
VRK3Q8IV63 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VRK3Q8IV63 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VRK3Q8IV63 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
VRK3Q8IV63 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VRK3Q8IV63 AC105020.1-201ENST00000435356 2205 ntBASIC16.73■□□□□ 0.27
VRK3Q8IV63 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms