Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AL732292.2-201ENST00000609649 430 ntBASIC17.29■□□□□ 0.36
PTPN4P29074 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 LINC00554-201ENST00000564841 3011 ntBASIC17.29■□□□□ 0.36
PTPN4P29074 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.29■□□□□ 0.36
PTPN4P29074 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
PTPN4P29074 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
PTPN4P29074 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.29■□□□□ 0.36
PTPN4P29074 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN4P29074 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
PTPN4P29074 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 KRT17P6-201ENST00000453795 1220 ntBASIC17.28■□□□□ 0.36
PTPN4P29074 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.28■□□□□ 0.36
PTPN4P29074 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.28■□□□□ 0.36
PTPN4P29074 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.28■□□□□ 0.36
PTPN4P29074 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN4P29074 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN4P29074 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.28■□□□□ 0.36
PTPN4P29074 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
PTPN4P29074 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PTPN4P29074 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN4P29074 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.27■□□□□ 0.36
PTPN4P29074 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 FDX1P1-201ENST00000449115 551 ntBASIC17.27■□□□□ 0.36
PTPN4P29074 GUSBP12-201ENST00000513727 720 ntBASIC17.27■□□□□ 0.36
PTPN4P29074 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.27■□□□□ 0.36
PTPN4P29074 Z69720.1-201ENST00000601483 472 ntBASIC17.27■□□□□ 0.36
PTPN4P29074 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.27■□□□□ 0.36
PTPN4P29074 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PTPN4P29074 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
PTPN4P29074 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PTPN4P29074 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.27■□□□□ 0.35
PTPN4P29074 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 AC233702.3-201ENST00000578656 1387 ntBASIC17.27■□□□□ 0.35
PTPN4P29074 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PTPN4P29074 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 KRT89P-201ENST00000620027 1478 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PTPN4P29074 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 EMBP1-201ENST00000458200 901 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 KRT18P31-201ENST00000506277 1292 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.26■□□□□ 0.35
PTPN4P29074 AC074051.2-201ENST00000565115 352 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.26■□□□□ 0.35
PTPN4P29074 KRT8P10-201ENST00000450021 1447 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.26■□□□□ 0.35
PTPN4P29074 AC016396.2-201ENST00000562575 1417 ntBASIC17.26■□□□□ 0.35
PTPN4P29074 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
PTPN4P29074 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms