Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 DUS2-210ENST00000567100 567 ntTSL 49.34□□□□□ -0.915e-8■■■■■ 111.5
SF3B1O75533 DUS2-209ENST00000566306 544 ntTSL 49.34□□□□□ -0.915e-8■■■■■ 111.5
SF3B1O75533 DUS2-214ENST00000571081 570 ntTSL 47.04□□□□□ -1.285e-8■■■■■ 111.5
SF3B1O75533 RAPGEF6-206ENST00000504919 581 ntTSL 32.73□□□□□ -1.975e-6■■■■■ 111.5
SF3B1O75533 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.99■■□□□ 1.431e-6■■■■■ 111.5
SF3B1O75533 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.79■■□□□ 1.41e-6■■■■■ 111.5
SF3B1O75533 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.391e-6■■■■■ 111.5
SF3B1O75533 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.011e-6■■■■■ 111.5
SF3B1O75533 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC9.76□□□□□ -0.854e-6■■■■■ 111.5
SF3B1O75533 SLMAP-214ENST00000467901 2698 ntTSL 27.45□□□□□ -1.224e-6■■■■■ 111.5
SF3B1O75533 COQ8A-209ENST00000489044 941 ntTSL 320.27■□□□□ 0.849e-7■■■■■ 111.4
SF3B1O75533 SPAG5-203ENST00000536674 870 ntTSL 312.19□□□□□ -0.468e-7■■■■■ 111.4
SF3B1O75533 SPAG5-206ENST00000578479 904 ntTSL 310.94□□□□□ -0.668e-7■■■■■ 111.4
SF3B1O75533 SPAG5-210ENST00000580567 899 ntTSL 310.94□□□□□ -0.668e-7■■■■■ 111.4
SF3B1O75533 TBC1D15-211ENST00000491063 1223 ntTSL 1 (best)18.72■□□□□ 0.593e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-216ENST00000549402 593 ntTSL 518.72■□□□□ 0.593e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-208ENST00000482439 863 ntTSL 514.9□□□□□ -0.023e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-206ENST00000474468 582 ntTSL 413.93□□□□□ -0.183e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-205ENST00000472611 640 ntTSL 312.58□□□□□ -0.43e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-217ENST00000550746 6184 ntTSL 1 (best) BASIC11.45□□□□□ -0.583e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.77□□□□□ -1.323e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-203ENST00000462788 1995 ntTSL 1 (best)3.98□□□□□ -1.773e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.953e-6■■■■■ 111.4
SF3B1O75533 TBC1D15-204ENST00000468049 363 ntTSL 51.2□□□□□ -2.223e-6■■■■■ 111.4
SF3B1O75533 TNKS-201ENST00000310430 9620 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.713e-8■■■■■ 111.4
SF3B1O75533 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.6□□□□□ -1.353e-8■■■■■ 111.4
SF3B1O75533 AC005726.2-203ENST00000584196 2103 ntTSL 219.94■□□□□ 0.782e-6■■■■■ 111.3
SF3B1O75533 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.49■□□□□ 0.072e-6■■■■■ 111.3
SF3B1O75533 SGK494-201ENST00000301037 1233 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.392e-6■■■■■ 111.3
SF3B1O75533 BCL2L1-208ENST00000450273 894 ntTSL 319.99■□□□□ 0.795e-6■■■■■ 111.3
SF3B1O75533 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.25e-6■■■■■ 111.3
SF3B1O75533 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.215e-6■■■■■ 111.3
SF3B1O75533 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC13.63□□□□□ -0.235e-6■■■■■ 111.3
SF3B1O75533 PRKCB-207ENST00000486868 467 ntTSL 312.11□□□□□ -0.472e-6■■■■■ 111.3
SF3B1O75533 DAPK1-217ENST00000496522 579 ntTSL 217.27■□□□□ 0.365e-6■■■■■ 111.3
SF3B1O75533 DAPK1-210ENST00000472344 548 ntTSL 515.83■□□□□ 0.125e-6■■■■■ 111.3
SF3B1O75533 SMAD3-212ENST00000559937 579 ntTSL 48.42□□□□□ -1.063e-7■■■■■ 111.2
SF3B1O75533 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.56■□□□□ 0.42e-6■■■■■ 111.2
SF3B1O75533 PFDN1-206ENST00000514611 1139 ntTSL 214.67□□□□□ -0.064e-6■■■■■ 111.2
SF3B1O75533 PFDN1-201ENST00000261813 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.414e-6■■■■■ 111.2
SF3B1O75533 PFDN1-203ENST00000510217 1091 ntTSL 2 BASIC11.3□□□□□ -0.64e-6■■■■■ 111.2
SF3B1O75533 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC7.85□□□□□ -1.154e-6■■■■■ 111.2
SF3B1O75533 SSBP2-203ENST00000504174 632 ntTSL 525.45■■□□□ 1.663e-6■■■■■ 111.2
SF3B1O75533 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.86■□□□□ 0.933e-6■■■■■ 111.2
SF3B1O75533 SSBP2-208ENST00000507655 845 ntTSL 519.67■□□□□ 0.743e-6■■■■■ 111.2
SF3B1O75533 SSBP2-207ENST00000507472 582 ntTSL 317.47■□□□□ 0.393e-6■■■■■ 111.2
SF3B1O75533 SSBP2-215ENST00000512098 566 ntTSL 514.23□□□□□ -0.133e-6■■■■■ 111.2
SF3B1O75533 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.17□□□□□ -0.143e-6■■■■■ 111.2
SF3B1O75533 SSBP2-219ENST00000515395 1398 ntTSL 2 BASIC11.11□□□□□ -0.633e-6■■■■■ 111.2
SF3B1O75533 SSBP2-205ENST00000505980 1521 ntTSL 2 BASIC9.39□□□□□ -0.913e-6■■■■■ 111.2
SF3B1O75533 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -13e-6■■■■■ 111.2
SF3B1O75533 SSBP2-212ENST00000509053 1534 ntTSL 2 BASIC8.71□□□□□ -1.013e-6■■■■■ 111.2
SF3B1O75533 SSBP2-211ENST00000509013 709 ntTSL 56.66□□□□□ -1.343e-6■■■■■ 111.2
SF3B1O75533 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.271e-6■■■■■ 111.2
SF3B1O75533 CACUL1-206ENST00000493518 3217 ntTSL 1 (best)15.9■□□□□ 0.143e-6■■■■■ 111.1
SF3B1O75533 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.353e-6■■■■■ 111.1
SF3B1O75533 SSH2-207ENST00000578411 633 ntTSL 213.38□□□□□ -0.272e-6■■■■■ 111.1
SF3B1O75533 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.41■□□□□ 0.385e-6■■■■■ 111.1
SF3B1O75533 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.245e-6■■■■■ 111.1
SF3B1O75533 SCAP-202ENST00000320017 3430 ntTSL 215.49■□□□□ 0.075e-6■■■■■ 111.1
SF3B1O75533 SCAP-207ENST00000441517 3748 ntTSL 214.98□□□□□ -0.015e-6■■■■■ 111.1
SF3B1O75533 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.98□□□□□ -0.015e-6■■■■■ 111.1
SF3B1O75533 KCTD10-202ENST00000440541 2493 ntTSL 218.47■□□□□ 0.552e-6■■■■■ 111
SF3B1O75533 DCTN1-225ENST00000497666 479 ntTSL 317.59■□□□□ 0.412e-6■■■■■ 111
SF3B1O75533 KCTD10-205ENST00000537165 2940 ntTSL 215.35■□□□□ 0.052e-6■■■■■ 111
SF3B1O75533 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.012e-6■■■■■ 111
SF3B1O75533 AGAP3-206ENST00000467250 422 ntTSL 314.84□□□□□ -0.032e-6■■■■■ 111
SF3B1O75533 DCTN1-218ENST00000466110 5414 ntTSL 213.21□□□□□ -0.292e-6■■■■■ 111
SF3B1O75533 DCTN1-210ENST00000434055 4229 ntTSL 212.92□□□□□ -0.342e-6■■■■■ 111
SF3B1O75533 DCTN1-206ENST00000409868 4202 ntTSL 5 BASIC12.36□□□□□ -0.432e-6■■■■■ 111
SF3B1O75533 CPVL-211ENST00000458405 525 ntTSL 412.14□□□□□ -0.472e-6■■■■■ 111
SF3B1O75533 DCTN1-227ENST00000633691 4160 ntTSL 5 BASIC11.62□□□□□ -0.552e-6■■■■■ 111
SF3B1O75533 DCTN1-201ENST00000361874 4500 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.552e-6■■■■■ 111
SF3B1O75533 DCTN1-202ENST00000394003 4479 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.642e-6■■■■■ 111
SF3B1O75533 DCTN1-204ENST00000409438 4145 ntTSL 1 (best) BASIC10.69□□□□□ -0.72e-6■■■■■ 111
SF3B1O75533 DCTN1-226ENST00000628224 4485 ntTSL 5 BASIC10.1□□□□□ -0.792e-6■■■■■ 111
SF3B1O75533 DCTN1-205ENST00000409567 4024 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.812e-6■■■■■ 111
SF3B1O75533 EMSY-216ENST00000533972 452 ntTSL 38.97□□□□□ -0.972e-6■■■■■ 111
SF3B1O75533 MAST2-205ENST00000470809 640 ntTSL 35.64□□□□□ -1.512e-6■■■■■ 111
SF3B1O75533 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.16□□□□□ -1.583e-7■■■■■ 111
SF3B1O75533 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.42□□□□□ -1.383e-7■■■■■ 111
SF3B1O75533 CTBP1-208ENST00000506180 843 ntTSL 520.18■□□□□ 0.824e-6■■■■■ 111
SF3B1O75533 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.173e-6■■■■■ 111
SF3B1O75533 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.822e-6■■■■■ 111
SF3B1O75533 RDH13-221ENST00000592573 1481 ntTSL 219.11■□□□□ 0.652e-6■■■■■ 111
SF3B1O75533 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.65■□□□□ 0.422e-6■■■■■ 111
SF3B1O75533 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.57■□□□□ 0.42e-6■■■■■ 111
SF3B1O75533 RDH13-219ENST00000591960 1328 ntTSL 514.85□□□□□ -0.032e-6■■■■■ 111
SF3B1O75533 RDH13-201ENST00000291892 3022 ntTSL 214.11□□□□□ -0.152e-6■■■■■ 111
SF3B1O75533 NR1H2-213ENST00000600978 235 ntTSL 311.01□□□□□ -0.653e-6■■■■■ 111
SF3B1O75533 PLEKHA2-203ENST00000519640 565 ntTSL 521.48■■□□□ 1.031e-6■■■■■ 111
SF3B1O75533 INTS1-202ENST00000468115 3051 ntTSL 214.75□□□□□ -0.053e-7■■■■■ 111
SF3B1O75533 RNU2-68P-201ENST00000410878 191 ntBASIC2.52□□□□□ -2.016e-7■■■■■ 111
SF3B1O75533 UBA1-206ENST00000442035 1054 ntTSL 523.19■■□□□ 1.33e-6■■■■■ 110.9
SF3B1O75533 UBA1-204ENST00000412206 1148 ntTSL 515.69■□□□□ 0.13e-6■■■■■ 110.9
SF3B1O75533 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.114e-6■■■■■ 110.9
SF3B1O75533 PPP2R1B-201ENST00000311129 2082 ntAPPRIS P4 TSL 1 (best) BASIC9.7□□□□□ -0.864e-6■■■■■ 110.9
SF3B1O75533 ACER3-214ENST00000534206 834 ntTSL 531.28■■■□□ 2.63e-6■■■■■ 110.9
SF3B1O75533 ACER3-211ENST00000531461 1292 ntTSL 226.53■■□□□ 1.843e-6■■■■■ 110.9
SF3B1O75533 ACER3-204ENST00000525861 2058 ntTSL 224.19■■□□□ 1.463e-6■■■■■ 110.9
Retrieved 100 of 46,956 protein–RNA pairs in 1697.1 ms