RNA–Protein interactions for RNA: ENST00000261813.8

PFDN1-201, Transcript of prefoldin subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN1, Length 1,352 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1-201ENST00000261813 AEBP2Q6ZN18 517 aaPredicted RBP31.17■■■□□ 2.58
PFDN1-201ENST00000261813 CHIC1Q5VXU3 224 aa30.18■■■□□ 2.42
PFDN1-201ENST00000261813 NISCHQ9Y2I1 1504 aa27.78■■■□□ 2.04
PFDN1-201ENST00000261813 PHF23Q9BUL5 403 aaPredicted RBP26.51■■□□□ 1.83
PFDN1-201ENST00000261813 SENP3Q9H4L4 574 aaPredicted RBP26.47■■□□□ 1.83
PFDN1-201ENST00000261813 FOXD1Q16676 465 aa24.59■■□□□ 1.53
PFDN1-201ENST00000261813 CCDC180Q9P1Z9 1646 aa24.58■■□□□ 1.53
PFDN1-201ENST00000261813 PLPPR3Q6T4P5 718 aa24.37■■□□□ 1.49
PFDN1-201ENST00000261813 ABCC9O60706 1549 aa23.98■■□□□ 1.43
PFDN1-201ENST00000261813 PPP6R1Q9UPN7 881 aa23.46■■□□□ 1.35
PFDN1-201ENST00000261813 ADRA2BP18089 450 aa23.38■■□□□ 1.33
PFDN1-201ENST00000261813 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
PFDN1-201ENST00000261813 DCAF8L2P0C7V8 631 aa23.09■■□□□ 1.29
PFDN1-201ENST00000261813 PIAS4Q8N2W9 510 aaPredicted RBP23.07■■□□□ 1.28
PFDN1-201ENST00000261813 NACADO15069 1562 aa23.07■■□□□ 1.28
PFDN1-201ENST00000261813 RB1CC1Q8TDY2 1594 aa23.04■■□□□ 1.28
PFDN1-201ENST00000261813 MYO15BQ96JP2 1530 aa22.99■■□□□ 1.27
PFDN1-201ENST00000261813 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
PFDN1-201ENST00000261813 MSH5O43196 834 aa22.79■■□□□ 1.24
PFDN1-201ENST00000261813 DNAJC5BQ9UF47 199 aa22.68■■□□□ 1.22
PFDN1-201ENST00000261813 UNC13AQ9UPW8 1703 aa22.54■■□□□ 1.2
PFDN1-201ENST00000261813 SCRIBQ14160 1630 aa22.47■■□□□ 1.19
PFDN1-201ENST00000261813 BICRAQ9NZM4 1560 aa22.38■■□□□ 1.17
PFDN1-201ENST00000261813 PABPN1Q86U42 306 aaKnown RBP eCLIP22.37■■□□□ 1.17
PFDN1-201ENST00000261813 SHROOM4Q9ULL8 1493 aa22.12■■□□□ 1.13
PFDN1-201ENST00000261813 POTEDQ86YR6 584 aa21.8■■□□□ 1.08
PFDN1-201ENST00000261813 EIF4G1Q04637 1599 aaKnown RBP21.76■■□□□ 1.07
PFDN1-201ENST00000261813 CECR2Q9BXF3 1484 aa21.65■■□□□ 1.06
PFDN1-201ENST00000261813 CC2D2AQ9P2K1 1620 aa21.62■■□□□ 1.05
PFDN1-201ENST00000261813 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
PFDN1-201ENST00000261813 BAZ1AQ9NRL2 1556 aaPredicted RBP21.5■■□□□ 1.03
PFDN1-201ENST00000261813 MROH2BQ7Z745 1585 aa21.42■■□□□ 1.02
PFDN1-201ENST00000261813 PPP4R3CPQ6ZMV5 832 aa21.42■■□□□ 1.02
PFDN1-201ENST00000261813 SCAF1Q9H7N4 1312 aaKnown RBP21.41■■□□□ 1.02
PFDN1-201ENST00000261813 ATAD2BQ9ULI0 1458 aa21.35■■□□□ 1.01
PFDN1-201ENST00000261813 SMARCA2P51531 1590 aa21.3■■□□□ 1
PFDN1-201ENST00000261813 NCAPD3P42695 1498 aa21.3■■□□□ 1
PFDN1-201ENST00000261813 PEG3Q9GZU2 1588 aa21.3■■□□□ 1
PFDN1-201ENST00000261813 MAPK8IP2Q13387 824 aaPredicted RBP21.28■■□□□ 1
PFDN1-201ENST00000261813 RSF1Q96T23 1441 aaPredicted RBP21.25■□□□□ 0.99
PFDN1-201ENST00000261813 HMGXB3Q12766 1538 aa21.21■□□□□ 0.99
PFDN1-201ENST00000261813 WIZO95785 1651 aa21.2■□□□□ 0.98
PFDN1-201ENST00000261813 BAZ1BQ9UIG0 1483 aaKnown RBP21.17■□□□□ 0.98
PFDN1-201ENST00000261813 DMRT2Q9Y5R5 561 aa21.11■□□□□ 0.97
PFDN1-201ENST00000261813 DNAJC5Q9H3Z4 198 aa21.09■□□□□ 0.97
PFDN1-201ENST00000261813 TOP2AP11388 1531 aaKnown RBP20.98■□□□□ 0.95
PFDN1-201ENST00000261813 CNKSR2Q8WXI2 1034 aa20.9■□□□□ 0.94
PFDN1-201ENST00000261813 SUPT5HO00267 1087 aaKnown RBP20.83■□□□□ 0.92
PFDN1-201ENST00000261813 CUX2O14529 1486 aa20.8■□□□□ 0.92
PFDN1-201ENST00000261813 ERCC6Q03468 1493 aa20.78■□□□□ 0.92
PFDN1-201ENST00000261813 NCBP3Q53F19 620 aaKnown RBP20.76■□□□□ 0.91
PFDN1-201ENST00000261813 NESP48681 1621 aa20.75■□□□□ 0.91
PFDN1-201ENST00000261813 CCDC88BA6NC98 1476 aa20.73■□□□□ 0.91
PFDN1-201ENST00000261813 LAMC3Q9Y6N6 1575 aa20.7■□□□□ 0.9
PFDN1-201ENST00000261813 CADPSQ9ULU8 1353 aa20.69■□□□□ 0.9
PFDN1-201ENST00000261813 KCNA4P22459 653 aa20.61■□□□□ 0.89
PFDN1-201ENST00000261813 CFTRP13569 1480 aa20.61■□□□□ 0.89
PFDN1-201ENST00000261813 HOXD11P31277 338 aaPredicted RBP20.6■□□□□ 0.89
PFDN1-201ENST00000261813 RNF216Q9NWF9 866 aaPredicted RBP20.58■□□□□ 0.88
PFDN1-201ENST00000261813 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
PFDN1-201ENST00000261813 KIF21AQ7Z4S6 1674 aa20.5■□□□□ 0.87
PFDN1-201ENST00000261813 NPM3O75607 178 aaKnown RBP20.49■□□□□ 0.87
PFDN1-201ENST00000261813 FANCD2Q9BXW9 1451 aa20.46■□□□□ 0.87
PFDN1-201ENST00000261813 PRDM2Q13029 1718 aa20.44■□□□□ 0.86
PFDN1-201ENST00000261813 CEP164Q9UPV0 1460 aa20.4■□□□□ 0.86
PFDN1-201ENST00000261813 THOC2Q8NI27 1593 aaKnown RBP20.4■□□□□ 0.86
PFDN1-201ENST00000261813 MRC2Q9UBG0 1479 aa20.34■□□□□ 0.85
PFDN1-201ENST00000261813 WDR62O43379 1518 aa20.27■□□□□ 0.84
PFDN1-201ENST00000261813 URB2Q14146 1524 aaKnown RBP20.26■□□□□ 0.83
PFDN1-201ENST00000261813 TOPBP1Q92547 1522 aa20.16■□□□□ 0.82
PFDN1-201ENST00000261813 DNMBPQ6XZF7 1577 aa20.14■□□□□ 0.81
PFDN1-201ENST00000261813 ABCC8Q09428 1581 aa20.12■□□□□ 0.81
PFDN1-201ENST00000261813 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
PFDN1-201ENST00000261813 CUX1P39880 1505 aa20.09■□□□□ 0.81
PFDN1-201ENST00000261813 DCAF8L1A6NGE4 600 aa20.03■□□□□ 0.8
PFDN1-201ENST00000261813 WRNQ14191 1432 aaPredicted RBP eCLIP20.01■□□□□ 0.79
PFDN1-201ENST00000261813 POLA1P09884 1462 aaPredicted RBP20■□□□□ 0.79
PFDN1-201ENST00000261813 SYNJ1O43426 1573 aa19.97■□□□□ 0.79
PFDN1-201ENST00000261813 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
PFDN1-201ENST00000261813 IFT140Q96RY7 1462 aa19.97■□□□□ 0.79
PFDN1-201ENST00000261813 TOP2BQ02880 1626 aa19.95■□□□□ 0.78
PFDN1-201ENST00000261813 BIVM-ERCC5R4GMW8 1640 aa19.95■□□□□ 0.78
PFDN1-201ENST00000261813 TARBP1Q13395 1621 aaKnown RBP19.92■□□□□ 0.78
PFDN1-201ENST00000261813 RAD54L2Q9Y4B4 1467 aa19.92■□□□□ 0.78
PFDN1-201ENST00000261813 SOGA1O94964 1423 aa19.9■□□□□ 0.78
PFDN1-201ENST00000261813 ZNF608Q9ULD9 1512 aaPredicted RBP19.89■□□□□ 0.77
PFDN1-201ENST00000261813 OSCARQ8IYS5 282 aa19.85■□□□□ 0.77
PFDN1-201ENST00000261813 WDR97A6NE52 1622 aa19.81■□□□□ 0.76
PFDN1-201ENST00000261813 EIF4G3O43432 1585 aaKnown RBP19.81■□□□□ 0.76
PFDN1-201ENST00000261813 ABCA10Q8WWZ4 1543 aa19.79■□□□□ 0.76
PFDN1-201ENST00000261813 AQRO60306 1485 aaKnown RBP eCLIP19.78■□□□□ 0.76
PFDN1-201ENST00000261813 TDRD9Q8NDG6 1382 aaKnown RBP19.78■□□□□ 0.76
PFDN1-201ENST00000261813 ABCA5Q8WWZ7 1642 aa19.7■□□□□ 0.74
PFDN1-201ENST00000261813 GAPVD1Q14C86 1478 aa19.68■□□□□ 0.74
PFDN1-201ENST00000261813 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
PFDN1-201ENST00000261813 PBRM1Q86U86 1689 aa19.63■□□□□ 0.73
PFDN1-201ENST00000261813 SNAPC4Q5SXM2 1469 aa19.61■□□□□ 0.73
PFDN1-201ENST00000261813 MAGI1Q96QZ7 1491 aaPredicted RBP19.57■□□□□ 0.72
PFDN1-201ENST00000261813 KIF27Q86VH2 1401 aa19.56■□□□□ 0.72
PFDN1-201ENST00000261813 SLC4A1APQ9BWU0 796 aaKnown RBP19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms