RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 NISCHQ9Y2I1 1504 aa17.53■□□□□ 0.4
SMAD3-212ENST00000559937 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
SMAD3-212ENST00000559937 ZCCHC6Q5VYS8 1495 aaKnown RBP14.82□□□□□ -0.04
SMAD3-212ENST00000559937 DCAF1Q9Y4B6 1507 aa14.58□□□□□ -0.08
SMAD3-212ENST00000559937 ABCC9O60706 1549 aa14.46□□□□□ -0.09
SMAD3-212ENST00000559937 SHROOM4Q9ULL8 1493 aa14.4□□□□□ -0.1
SMAD3-212ENST00000559937 MYO15BQ96JP2 1530 aa14.28□□□□□ -0.12
SMAD3-212ENST00000559937 DCAF8L2P0C7V8 631 aa14.14□□□□□ -0.15
SMAD3-212ENST00000559937 NACADO15069 1562 aa14.04□□□□□ -0.16
SMAD3-212ENST00000559937 SUPT5HO00267 1087 aaKnown RBP14.03□□□□□ -0.16
SMAD3-212ENST00000559937 SCRIBQ14160 1630 aa13.93□□□□□ -0.18
SMAD3-212ENST00000559937 RB1CC1Q8TDY2 1594 aa13.83□□□□□ -0.2
SMAD3-212ENST00000559937 CHIC1Q5VXU3 224 aa13.7□□□□□ -0.22
SMAD3-212ENST00000559937 RSF1Q96T23 1441 aaPredicted RBP13.69□□□□□ -0.22
SMAD3-212ENST00000559937 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
SMAD3-212ENST00000559937 DNAJC5BQ9UF47 199 aa13.56□□□□□ -0.24
SMAD3-212ENST00000559937 BAZ1AQ9NRL2 1556 aaPredicted RBP13.54□□□□□ -0.24
SMAD3-212ENST00000559937 PABPN1Q86U42 306 aaKnown RBP eCLIP13.53□□□□□ -0.24
SMAD3-212ENST00000559937 CECR2Q9BXF3 1484 aa13.53□□□□□ -0.24
SMAD3-212ENST00000559937 MROH2BQ7Z745 1585 aa13.53□□□□□ -0.24
SMAD3-212ENST00000559937 WIZO95785 1651 aa13.48□□□□□ -0.25
SMAD3-212ENST00000559937 SMARCA4P51532 1647 aa13.44□□□□□ -0.26
SMAD3-212ENST00000559937 BICRAQ9NZM4 1560 aa13.4□□□□□ -0.26
SMAD3-212ENST00000559937 TOP2AP11388 1531 aaKnown RBP13.38□□□□□ -0.27
SMAD3-212ENST00000559937 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
SMAD3-212ENST00000559937 PEG3Q9GZU2 1588 aa13.29□□□□□ -0.28
SMAD3-212ENST00000559937 SMARCA2P51531 1590 aa13.25□□□□□ -0.29
SMAD3-212ENST00000559937 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
SMAD3-212ENST00000559937 CCDC88BA6NC98 1476 aa13.17□□□□□ -0.3
SMAD3-212ENST00000559937 LOC105371045A0A1W2PR82 267 aa13.11□□□□□ -0.31
SMAD3-212ENST00000559937 ATAD2BQ9ULI0 1458 aa13.06□□□□□ -0.32
SMAD3-212ENST00000559937 CC2D2AQ9P2K1 1620 aa13.06□□□□□ -0.32
SMAD3-212ENST00000559937 BAZ1BQ9UIG0 1483 aaKnown RBP13.02□□□□□ -0.33
SMAD3-212ENST00000559937 ABCC8Q09428 1581 aa13.01□□□□□ -0.33
SMAD3-212ENST00000559937 HMGXB3Q12766 1538 aa12.98□□□□□ -0.33
SMAD3-212ENST00000559937 EEA1Q15075 1411 aa12.98□□□□□ -0.33
SMAD3-212ENST00000559937 HRCP23327 699 aa12.93□□□□□ -0.34
SMAD3-212ENST00000559937 TRIM26Q12899 539 aaPredicted RBP12.91□□□□□ -0.34
SMAD3-212ENST00000559937 FAM9AQ8IZU1 332 aaPredicted RBP12.91□□□□□ -0.34
SMAD3-212ENST00000559937 PCGF6Q9BYE7 350 aa12.91□□□□□ -0.34
SMAD3-212ENST00000559937 NCAPD3P42695 1498 aa12.91□□□□□ -0.34
SMAD3-212ENST00000559937 WRNQ14191 1432 aaPredicted RBP eCLIP12.89□□□□□ -0.35
SMAD3-212ENST00000559937 PRDM2Q13029 1718 aa12.87□□□□□ -0.35
SMAD3-212ENST00000559937 SYNJ1O43426 1573 aa12.86□□□□□ -0.35
SMAD3-212ENST00000559937 BIVM-ERCC5R4GMW8 1640 aa12.85□□□□□ -0.35
SMAD3-212ENST00000559937 KIF21BO75037 1637 aa12.82□□□□□ -0.36
SMAD3-212ENST00000559937 TOP2BQ02880 1626 aa12.82□□□□□ -0.36
SMAD3-212ENST00000559937 SOGA1O94964 1423 aa12.79□□□□□ -0.36
SMAD3-212ENST00000559937 TNIKQ9UKE5 1360 aa12.79□□□□□ -0.36
SMAD3-212ENST00000559937 GOLGA3Q08378 1498 aa12.78□□□□□ -0.36
SMAD3-212ENST00000559937 CSRNP3Q8WYN3 585 aa12.75□□□□□ -0.37
SMAD3-212ENST00000559937 CEP164Q9UPV0 1460 aa12.74□□□□□ -0.37
SMAD3-212ENST00000559937 RUSC2Q8N2Y8 1516 aa12.73□□□□□ -0.37
SMAD3-212ENST00000559937 CEP162Q5TB80 1403 aa12.72□□□□□ -0.37
SMAD3-212ENST00000559937 CFTRP13569 1480 aa12.71□□□□□ -0.38
SMAD3-212ENST00000559937 ZEB1P37275 1124 aaPredicted RBP12.65□□□□□ -0.38
SMAD3-212ENST00000559937 EHMT2Q96KQ7 1210 aa12.65□□□□□ -0.38
SMAD3-212ENST00000559937 ERICH3Q5RHP9 1530 aa12.65□□□□□ -0.38
SMAD3-212ENST00000559937 CUX1P39880 1505 aa12.64□□□□□ -0.39
SMAD3-212ENST00000559937 UBTFP17480 764 aaKnown RBP12.57□□□□□ -0.4
SMAD3-212ENST00000559937 CADPSQ9ULU8 1353 aa12.56□□□□□ -0.4
SMAD3-212ENST00000559937 PRXQ9BXM0 1461 aa12.56□□□□□ -0.4
SMAD3-212ENST00000559937 CLIP1P30622 1438 aa12.55□□□□□ -0.4
SMAD3-212ENST00000559937 RAPGEF2Q9Y4G8 1499 aa12.55□□□□□ -0.4
SMAD3-212ENST00000559937 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
SMAD3-212ENST00000559937 VPS8Q8N3P4 1428 aa12.52□□□□□ -0.41
SMAD3-212ENST00000559937 ERCC6Q03468 1493 aa12.47□□□□□ -0.41
SMAD3-212ENST00000559937 DNMBPQ6XZF7 1577 aa12.47□□□□□ -0.41
SMAD3-212ENST00000559937 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
SMAD3-212ENST00000559937 PPARGC1BQ86YN6 1023 aaKnown RBP12.46□□□□□ -0.41
SMAD3-212ENST00000559937 NESP48681 1621 aa12.45□□□□□ -0.42
SMAD3-212ENST00000559937 FGD5Q6ZNL6 1462 aa12.44□□□□□ -0.42
SMAD3-212ENST00000559937 FANCD2Q9BXW9 1451 aa12.44□□□□□ -0.42
SMAD3-212ENST00000559937 CUX2O14529 1486 aa12.43□□□□□ -0.42
SMAD3-212ENST00000559937 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
SMAD3-212ENST00000559937 DNAJC5Q9H3Z4 198 aa12.39□□□□□ -0.43
SMAD3-212ENST00000559937 WDR97A6NE52 1622 aa12.39□□□□□ -0.43
SMAD3-212ENST00000559937 CUL7Q14999 1698 aa12.38□□□□□ -0.43
SMAD3-212ENST00000559937 ABCA10Q8WWZ4 1543 aa12.37□□□□□ -0.43
SMAD3-212ENST00000559937 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
SMAD3-212ENST00000559937 IGF1RP08069 1367 aa12.34□□□□□ -0.43
SMAD3-212ENST00000559937 APLP2Q06481 763 aa12.33□□□□□ -0.44
SMAD3-212ENST00000559937 PDS5BQ9NTI5 1447 aa12.33□□□□□ -0.44
SMAD3-212ENST00000559937 CTTNBP2Q8WZ74 1663 aa12.32□□□□□ -0.44
SMAD3-212ENST00000559937 POLA1P09884 1462 aaPredicted RBP12.32□□□□□ -0.44
SMAD3-212ENST00000559937 ARHGAP35Q9NRY4 1499 aa12.32□□□□□ -0.44
SMAD3-212ENST00000559937 MAP3K1Q13233 1512 aa12.32□□□□□ -0.44
SMAD3-212ENST00000559937 CARMIL1Q5VZK9 1371 aa12.3□□□□□ -0.44
SMAD3-212ENST00000559937 CCER1Q8TC90 406 aaPredicted RBP12.29□□□□□ -0.44
SMAD3-212ENST00000559937 ABCA5Q8WWZ7 1642 aa12.28□□□□□ -0.44
SMAD3-212ENST00000559937 KIF21AQ7Z4S6 1674 aa12.28□□□□□ -0.44
SMAD3-212ENST00000559937 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.44
SMAD3-212ENST00000559937 THOC2Q8NI27 1593 aaKnown RBP12.27□□□□□ -0.44
SMAD3-212ENST00000559937 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.26□□□□□ -0.45
SMAD3-212ENST00000559937 EFCAB5A4FU69 1503 aa12.26□□□□□ -0.45
SMAD3-212ENST00000559937 CFAP43Q8NDM7 1665 aa12.26□□□□□ -0.45
SMAD3-212ENST00000559937 TIAM1Q13009 1591 aa12.23□□□□□ -0.45
SMAD3-212ENST00000559937 RAD54L2Q9Y4B4 1467 aa12.23□□□□□ -0.45
SMAD3-212ENST00000559937 TTBK1Q5TCY1 1321 aaPredicted RBP12.23□□□□□ -0.45
SMAD3-212ENST00000559937 FHAD1B1AJZ9 1412 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms